Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07125 ATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAAAAATACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTAGAGGGAGAGCTTATGGTAACCCTTGGATCATTACATCCATGGTTGATCAAAACAGCAACAAATTCGAATAAGTTTTACTCTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGCTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAAGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTAA 666 0.3949 MQGLNMLRKITSGFIDVYESGNSDKLPGLQKIQKKMVGSSVFPLEGELMVTLGSLHPWLIKTATNSNKFYSSQELNQLEKFKSDFRLGSKVRFILNLIIRVVKKEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFQDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKG. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07125 221 SMART helicmild6 118 207 IPR001650 -
Seca3g07125 221 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 221 IPR044567 GO:0080188
Seca3g07125 221 Pfam Helicase conserved C-terminal domain 90 206 IPR001650 -
Seca3g07125 221 Gene3D - 29 221 IPR027417 -
Seca3g07125 221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 93 221 IPR001650 -
Seca3g07125 221 CDD SF2_C_SNF 82 218 - -
Seca3g07125 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07125 Seca-Chr3 168538324 168539040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07125 133 221 RAD5 or RAD16-like Gene Family AT5G05130 40.000 4.88e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07125 K10875 - jre:108991882 306.99