Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07114 ATGCACATAAAATCTGGTAACCAAGGCAAACAAACCATCATAAAGGCAATGCAGACATACAAGGTCCTCATATTGACGCTGTACTCTTTCTATTTCTGCTTCATTACCCCTTTATCTATACATGCCACTGTTACTATTACTCCAAATCAGTCTATTCAAGGTAATGAGACCCTGGTCTCTATAACTGGAACTTTTGAAGCTGGATTCTTCAACTTTGGAAATTCACAACGCCAATACTTTGGTATATGGTACAAGAACCTATTACCTAGGACTTTTGTTTGGGTTGCCAATAGAGATGCCCCAGTACAAAACTCAACAGCAATTCTGCAACTTACTCATCAAGGAAATCTTGTTATTCTTGATGGCTCTAGAGTTATTGTGTGGTCTTCCTCCAATGCATCAAGAATTGCAGAGAAACCACTGATGCAACTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAATTTTTTGTGGGAAAGTTTTGATTACCCTGGTAATACTTTCCTTGCAGGAATGAAACTTAGGACAAATTTGGTTACTGGCCCTTATAGGTCTCTCACATCTTGGAAAAGCACAGAAGATCCTGCTGTTGGTGAGTTTTCATATCATATAGATGCTCGTGGCTTTCCTCAACTAGTTACTACAAAAGGAGAAACTTTATATAGCAGAGGAGGGTCATGGAATGGCTTTATTTTTAATGGTGTTTCATGGCTAAGAATGCTTAACTTGTTCAATTTTTCTTTAGTGTTTACTGACAAGGAAGTCTCTTACGAATATGAAACATTAAGCAATGAAACTGTTACTATATTAGTGCTCAATCCATCAGGTTTTGTACAACGGTTGATATGGTCAGATAGGAAAGGAAGTTGGGACTGGGAGATTATATCTACTCGTCCAATGGATCAGTGTGAATATTATTCCTATTGTGATGCTAATTCTGTCTGCAATATTACTAACTCCCCAAAGATATGTCAATGCTTGGAAGGTTTCATACCAAAATTCCAAGAAAAGTGGAATTCATCAGATTGGTCTGGTGGGTGTGTTAGAAGAATAAGCTTAAATTGTCATAGTGATGGGTTTGTGCAGTACACAGGAATGAAATTGCCAGATACATCATCTTCCTGGTTTGACCAGAGCTTGAGCCTTGAGAAATGTAAGACATTGTGTTTGAAAAATTGCTCTTGCACAGCATATGCAAAATCAGATATCAATGGTGAGAGTGGATGCTTACATTGGTTTGGTAACATTCTGGACTTGACAAAACACACAGACCAAGGACAAGATATTTTCATACGAGTTGCAGCTTCAGAGTTAGCTTGTTTGTTGACTAGAATGCTTTACCATTCTTCAGATCGTAGAAGGGATAAGAGCAGCTTTAATAACAAGAAGCTTGCAGGGACACTAGTAGGAATTGTTATATTCATCATGGTTCTTGTACTGGTCATATTCACATATATAAAGAGGAAGAAGCTAGCAAAGCCAGGTGAATTTATGAAAAGGATGTTAAAAATATTTCATTGGAAGTACAAACGGGAGAAGGAAGACGTGGAGTTATCAACAATATTTGATTTTTCAACCATGTCTAATGCCACATATCACTTCTCAGAAAGTAACAAGTTAGGACAAGGTGGCTTTGGACCAGTGTACAAGGGAATTTTAGAAGATGGAGAAGAGATTGCAGTCAAGAGGCTATCAAAAACTTCTGATCAAGGAGCAGAGCAGTTCAAAAATGAAGTCATGTTGATGGCGAAACTGCAGCACCGAAACCTTGTAAAACTTCTTGGTTGTTCTATTCATCAAGATGAGAAGCTCTTGATCTATGAATTCATGCCAAACAGAAGCTTGGATTACTTTATTTTTGATTCAACTCGAAGTAAACAACTAGACCTGACAAAACGCTTTCAAATTATTGATGGGATTGCTCGAGGGCTACTTTATCTTCATCAAGACTCTAGATTAAGAATCATCCACAGAGACCTCAAAACTAGTAATATTCTTCTTGATAACAATATGAACCCAAGGATATCAGATTTTGGTTTGGCTAGAACATTTGGAGGTGATCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCATTGCATGGATCTTTTTCAATCAAATCAGATGTGTTCAGCTTTGGTGTAATTGTACTGGAGATAATTAGTGGGAGAAAGAATAGGAATTTTTATGATCCTCAGCACCATCTTAATCTTCTTAGTCATGCATGGAGATTGTGGATTGAACAAAAGCCACTAGAGTTAATGGATGACTTATTCCATGGAAAAACCATTCCACCTGAAATATTGAGATGTATTCATGTGGGTCTACTATGTGTGCAACAAATACCAGAAAATAGGCCAAACATGTCATCAGTGGTTCTAATGTTGAATGGTGAAAAATTGTTGCCTGAGCCAAGCCAACCTGGGTTCTACACAGGAACAGATCATCATCCAATTCAAGTAGAATCTTCTTCAAGAAGTTGTGGAGATTTTTCACAAAATGACGCTTCTTTATCGTTGTTAGAGGCAAGATAG 2568 0.3766 MHIKSGNQGKQTIIKAMQTYKVLILTLYSFYFCFITPLSIHATVTITPNQSIQGNETLVSITGTFEAGFFNFGNSQRQYFGIWYKNLLPRTFVWVANRDAPVQNSTAILQLTHQGNLVILDGSRVIVWSSSNASRIAEKPLMQLLDSGNLVVKDGENFLWESFDYPGNTFLAGMKLRTNLVTGPYRSLTSWKSTEDPAVGEFSYHIDARGFPQLVTTKGETLYSRGGSWNGFIFNGVSWLRMLNLFNFSLVFTDKEVSYEYETLSNETVTILVLNPSGFVQRLIWSDRKGSWDWEIISTRPMDQCEYYSYCDANSVCNITNSPKICQCLEGFIPKFQEKWNSSDWSGGCVRRISLNCHSDGFVQYTGMKLPDTSSSWFDQSLSLEKCKTLCLKNCSCTAYAKSDINGESGCLHWFGNILDLTKHTDQGQDIFIRVAASELACLLTRMLYHSSDRRRDKSSFNNKKLAGTLVGIVIFIMVLVLVIFTYIKRKKLAKPGEFMKRMLKIFHWKYKREKEDVELSTIFDFSTMSNATYHFSESNKLGQGGFGPVYKGILEDGEEIAVKRLSKTSDQGAEQFKNEVMLMAKLQHRNLVKLLGCSIHQDEKLLIYEFMPNRSLDYFIFDSTRSKQLDLTKRFQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDNNMNPRISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGSFSIKSDVFSFGVIVLEIISGRKNRNFYDPQHHLNLLSHAWRLWIEQKPLELMDDLFHGKTIPPEILRCIHVGLLCVQQIPENRPNMSSVVLMLNGEKLLPEPSQPGFYTGTDHHPIQVESSSRSCGDFSQNDASLSLLEAR. 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07114 855 ProSiteProfiles Bulb-type lectin domain profile. 43 165 IPR001480 -
Seca3g07114 855 Gene3D Phosphorylase Kinase; domain 1 509 611 - -
Seca3g07114 855 SUPERFAMILY Protein kinase-like (PK-like) 519 807 IPR011009 -
Seca3g07114 855 SMART blect_4 49 166 IPR001480 -
Seca3g07114 855 CDD TM_EGFR-like 466 495 - -
Seca3g07114 855 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 197 IPR036426 -
Seca3g07114 855 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 39 163 - -
Seca3g07114 855 PIRSF SRK 15 855 IPR024171 GO:0004674
Seca3g07114 855 CDD STKc_IRAK 542 809 - -
Seca3g07114 855 Pfam PAN-like domain 357 421 IPR003609 -
Seca3g07114 855 Pfam Protein tyrosine and serine/threonine kinase 539 804 IPR001245 GO:0004672|GO:0006468
Seca3g07114 855 CDD PAN_AP_plant 355 436 - -
Seca3g07114 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Seca3g07114 855 Gene3D - 39 163 IPR036426 -
Seca3g07114 855 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 32 798 - -
Seca3g07114 855 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 612 815 - -
Seca3g07114 855 Pfam S-locus glycoprotein domain 225 335 IPR000858 GO:0048544
Seca3g07114 855 ProSiteProfiles PAN/Apple domain profile. 357 436 IPR003609 -
Seca3g07114 855 ProSiteProfiles EGF-like domain profile. 301 338 IPR000742 -
Seca3g07114 855 Pfam D-mannose binding lectin 91 192 IPR001480 -
Seca3g07114 855 CDD B_lectin 49 166 IPR001480 -
Seca3g07114 855 SMART ntp_6 357 435 IPR003609 -
Seca3g07114 855 SMART serkin_6 536 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07114 855 ProSiteProfiles Protein kinase domain profile. 536 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07114 855 Gene3D Transferase(Phosphotransferase) domain 1 612 813 - -
Seca3g07114 855 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 500 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07114 Seca-Chr3 168168813 168173260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07114 477 821 Receptor kinase-like Gene Family AT4G23230 53.026 1.80e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07114 PK_Tyr_Ser-Thr 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07114 - - gmx:100803275 1298.11