Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07113 ATGAAACTCAGCACAAATTTAGTTACGGGTACTTATAGGTCTCTCACATCTTGGAAAAGCACAGAAGATCCTGCTATGGGTGAGTATTCATATCACATAAATGCTCATGGGTTTCCTCAACTAGTTACTACAAAGGGAGGAACTTTATTTAGCAGTGCAGGGTCATGGAATGGCTATGTTTTTGGTGGACTTTCATGGCTAAGAATGCTTAAATTGTTCAATTTTTCTTTAGTGTATACTGACAAAGAAGTCTCTTACGAATATGAAACATTAAGAAAAGAAACTGTTACTAGATTAGTGCTCAATCCATCAGGCATTGCACAACGTTTTAAATGGTCAGATAGGACAGGAGGGTGGGAGATTATAGCTTCTCGTCCCACAGATGAGTGTGAATATTATTCCTTTTGTGATGCTAATTCTCTCTGCAATATCACTAACTCTCCAAAATTATGTCAATGCTTGGAAGGTTTCACACCCAAATTCCCAAATAGATGGAATGCATTGGATTGGTCTGGTGGGTGTGTTAGAAGAATAAGCTTAAATTGTCATAGTGATGGGTTTGTGCAGTACACAGGAATGAAATTGCCAGATACATCAGCTTCCTGGTTTGACAAGAGCTTGAGCCTTGAGAAATGTGAGACACTGTGTTTGAAGAATTGCTCTTGTACAGCATATGCAAAGTCAGATATCAAAGATAATAGTGGATGCTTGCTTTGGTTTGGTGACATTTTAGACATGACAAAACACATAGACCAAGGACAAGATATTTGCATACGAGTTGCAGCTTCAGAGTTAGGAAGGAATAAGAGCAGCTTTAATAACAAGAAACTTGCAGGGATACTAGTAGGAATTGTTATATTCATCATGGTTCTTGGACTGGTCATATTCACATATATAAAGAGGAAGAAGCTAGCAAAGCCAGGTGAATTTATGGAAAGTAACAAAATTGACTCTTTATATACTCCAATGTTAGAAAGGATGTTAAAAGTATTTCACTGGAAGTACAAAAGGGAGAAGGATGATGTGGAGTTATCAACAATATTTGATTTTACAACCATCTCTAATGCCACAAATCACTTCTCAGAAAGTAACAAGTTAGGCCAAGGTGGCTTTGGACCAGTGTACAAGGGCATATTAGAAGATGGGCAAGAGATTGCAGTCAAGAGGCTTTCAAAAACTTCTGAACAAGGAGCAGAGCAGTTCAAAAATGAAGTTATGTTGATGGCAAAACTTCAGCATCGAAATCTAGTTAAACTTCATGGTTGCTCTATTCATCAAGATGAAAAGCTCTTGATCTACGAATTCATGCCTAACAGAAGCTTGGATTACTTTATTTTTGATTCAACTCGAAGCAAACAACTAGATCTGACAAAACGTTTCCAAATTATTGATGGGGTTGCTAGAGGGCTACTTTATCTTCATCAAGACTCTAGATTAAGAATCATTCACAGAGACCTCAAAGCTAGTAATATTCTTCTTGATAGCAATATGAACCCAAGGATATCAGATTTTGGTCTGGCTAGGACATTTGGAGATCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCATTGCATGGATCTTTTTCAATCAAATCTGATGTATTTAGCTTTGGTGTAATTGTGCTGGAGATAATTAGTGGGAGAAAGAATCGGATATTTCATGATCCTCAACATCATCTTAATCTTCTTAGTCATGCATGGAGATTGTGGATTGAAGAAAAGCCACAAGAGTTATTGGATGATTTATTCCATGGTACAACCACTCCACCTGAAATATTGCGATGTATTCATGTGGGTCTACTATGTGTGCAACAAATACCAGAAAATAGACCAAACATGTCATCTGTGGTTCTAATGTTGAATGGTGAAAAATTATTGCCTGATCCAAGCCAACCCGGGTTTTACACAGGAACACACCATCCTCCAATTCAGGTAGAATCCTCTTCAGGAAGTTGTGAAGATTGTTCACAAAATGAGGCTTCTGTGTCTTTGTTAGAGGCACGATAG 2037 0.378 MKLSTNLVTGTYRSLTSWKSTEDPAMGEYSYHINAHGFPQLVTTKGGTLFSSAGSWNGYVFGGLSWLRMLKLFNFSLVYTDKEVSYEYETLRKETVTRLVLNPSGIAQRFKWSDRTGGWEIIASRPTDECEYYSFCDANSLCNITNSPKLCQCLEGFTPKFPNRWNALDWSGGCVRRISLNCHSDGFVQYTGMKLPDTSASWFDKSLSLEKCETLCLKNCSCTAYAKSDIKDNSGCLLWFGDILDMTKHIDQGQDICIRVAASELGRNKSSFNNKKLAGILVGIVIFIMVLGLVIFTYIKRKKLAKPGEFMESNKIDSLYTPMLERMLKVFHWKYKREKDDVELSTIFDFTTISNATNHFSESNKLGQGGFGPVYKGILEDGQEIAVKRLSKTSEQGAEQFKNEVMLMAKLQHRNLVKLHGCSIHQDEKLLIYEFMPNRSLDYFIFDSTRSKQLDLTKRFQIIDGVARGLLYLHQDSRLRIIHRDLKASNILLDSNMNPRISDFGLARTFGDQAEANTNRVMGTYGYMPPEYALHGSFSIKSDVFSFGVIVLEIISGRKNRIFHDPQHHLNLLSHAWRLWIEEKPQELLDDLFHGTTTPPEILRCIHVGLLCVQQIPENRPNMSSVVLMLNGEKLLPDPSQPGFYTGTHHPPIQVESSSGSCEDCSQNEASVSLLEAR. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07113 678 Pfam Protein tyrosine and serine/threonine kinase 363 627 IPR001245 GO:0004672|GO:0006468
Seca3g07113 678 SMART ntp_6 182 260 IPR003609 -
Seca3g07113 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Seca3g07113 678 SMART serkin_6 360 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07113 678 ProSiteProfiles PAN/Apple domain profile. 182 257 IPR003609 -
Seca3g07113 678 CDD STKc_IRAK 366 632 - -
Seca3g07113 678 Gene3D Phosphorylase Kinase; domain 1 333 435 - -
Seca3g07113 678 ProSiteProfiles BCL2-like apoptosis inhibitors family profile. 62 121 IPR002475 -
Seca3g07113 678 CDD PAN_AP_plant 180 261 - -
Seca3g07113 678 CDD TM_EGFR-like 277 306 - -
Seca3g07113 678 ProSiteProfiles EGF-like domain profile. 126 163 IPR000742 -
Seca3g07113 678 MobiDBLite consensus disorder prediction 651 678 - -
Seca3g07113 678 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 436 638 - -
Seca3g07113 678 SUPERFAMILY Protein kinase-like (PK-like) 344 653 IPR011009 -
Seca3g07113 678 MobiDBLite consensus disorder prediction 640 678 - -
Seca3g07113 678 Gene3D Transferase(Phosphotransferase) domain 1 436 636 - -
Seca3g07113 678 Pfam S-locus glycoprotein domain 53 161 IPR000858 GO:0048544
Seca3g07113 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 110 657 - -
Seca3g07113 678 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g07113 678 Pfam PAN-like domain 182 246 IPR003609 -
Seca3g07113 678 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 326 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07113 Seca-Chr3 168150607 168154716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07113 338 644 Receptor kinase-like Gene Family AT4G23230 57.419 1.25e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g07113 PK_Tyr_Ser-Thr 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07113 - - tpra:123913214 1077.77