Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07106 ATGAATATCTTTAATGTTGGGGAAATGGGAAATAAGATCATCATCACAACACGAGATCAAAGTGTTGCACTAGCCATGCAAACCTTTCTTCCTATCCACTATTTGACACCTTTGGAAAGTGAAGATTGCTGGTCTTTACTTGCCAAACATGCATTTGGACCAAGCAACTCCCAACAACGGTCCGAATTAGAAGTGGTTGGCAGAGAAATAGCCAAAATATGTGATGGATTACCATTAGCTGCAGTAGCACTTGGGGGTCTTCTTCGCACCAAATTGTCACAAAATGACTGGAACAAGGTATTAAAAAGTAACATTTGGGTTTTGCCAAATAGGTCAGAAAATTGGGAAGAAGTTGGAGAAGAATACTTTGATGAACTAGTGCCAAGGTCGCTCATACTTCGACGGACTGTTGGTGGGGAAGAAAGCTTTGTAATGCATGACCTCATCAATGATTTAGCTACAATGGTTTCATCTGCATATTGTTTCAGGTTGGACGAATCGAAGTCGCATCAAAGTCTTGAAAGAGTATGTCATTTGTCATACAACAAGGTAGTAAATGAGTTGTTGCCAACAATGAAACAGTTACGGGTGTTGTCTTTGTCACACTATAGAATCACTGAGTTGCCCAACTCTATTGGAAATTTGATATACTTGCGGTACTTAAATCTCTCTTTCACTCTAATTGTAAAGTTGCCTTCAGTAACATGCAAGCTTTGCAATCTACAAGCCTTGTTGTTGTCCAGCTGTAAGAATCTCACCGAATTGCTTGACGACATGGGAAAATTGGTGAATCTACGCCACCTTGACATTAGTGGTACTGCATTGGAGGAGTTGCCGGTACAAATAACAAGATTACAAAATCTGCAAACCTTGTCTGATTTTATTGTCAGCGAACAACATGATGGAGTGAAGGTTGCAGATCTGGGAAAATTTCTTCATCTTCAGGGGAAACTCTCCATCTCGCAGCTACAAAATGTTTCCAACACCCTTGATGCTTCTCAAGCAAATTTGAAGATGAAAGAACAAATTGACAAGTTGGAACTAACATGGAATGGGAATGGCGCTGGCTTACAAATTCAAAGTGTTGTACTTGAACAGTTGCGGCCCTCAACAAAATTAAAGAGTCTCACCATCAGTGGCTATGGTGGAACCAGCTTTCCAAATTGGTTGGGTGATTCTTCATTTGGCAACATGGTGTCTTTGTACATATCTGATTGTGATCATTGTTCATGGCTGCCACCCCTTGGAGAATTACATAGCCTAAAAGAACTCTTTATTTCTGGGATGAAATCAGTGAAGATTGTCGGTGCTGAATTTTACGGAAGTAGTGCTCCTTCATGTCAACCATTTCCCTTTTTGGAGATTCTGAGGTTTAGGAATATGCCAGAGCGGGAGGAATGGAAGTTAATTGGAGGTACATCTACAGAGTTTCCTCATCTAAGACGTTTGTCACTGACAGAATGTCCAGAACTCAAAGGAAACGTACCCACCAACCTTCCTTCCTTAAGTGAACTTGTGTTAGACAGATGTGGTTGTCTAGTGGAGTCAGGGCATTCAAATGATAATAGTCTATTCCAATGGATGCTGCCTCTGCATTCTCTTCGGAAGTTAAGGATATCTGACTTTCCCTCTCTGACTTCCTTCCCAAAAGACGGACTACCCAAAACCTTACAATATCTCGATCTTGCTTACTGTGAGAATCTGGAATTCCTTCCCCGTGAATCCTTGCACAACTACACATCACTTGAGCATTTAACAATACACAATAGTTGTAATTCAATGACATCCTTTGCCTTGGGCTCTCTCCCAGTGCTCAAAAGTCTTCATCTCTCGTATTGTGAAAATCTTAAATTGATTTTCATTGAAGAAGATGCGTCGCAGAGTCTCTCCTTTCTTCAAAACATTTATATAGATTTGTGTGATGAATTGGAGTCATTTTCCCCGGGTGGATTGCCCACTCCTAACCTCATTCATTTCTCGGTGTCTTTGTGTAAGAAGCTTTATTCACTACCAGAACCAATAATCGCTTTCCCTAGCCTTCAAAAATTGCAAATTAATAGGCTTCCAAATCTGCAATCTTTTGCTAAAGAGGGTTTGCCTATCAATTTACGGGAACTAGGTATCAGCAGGCTGGGGAACACTCAAGTTACTGAGTGGAGTTTGGAAAGTCTCACCTGTCTTTCTGTGTTGCAGCTTTATGGTGATGATATCGTGAATGCCTTGATGAAAATGGAAGTGCCATTGCTACCAGCTTCAATCGTGTCGTTAACCATCTATTGGCTTCATGATATAGAATGCTTGGATGGGAAGTGGCTTCACCATCTCACCTCTCTCCAAACCCTTGAGATTATACATTCTCCCAACCTCAAGTCATTTCCAGAAGAGGGATTGCCTTCCTCTCTCCAAACTCTGGAGATCTATAACTGTCCATTGCTGAAAGCAAGTTGGCAGAGGAAGCGGGGGAAAGAGTGGGTTAAGATTGCTCACATTCCCAGCATAGTTATTGATAAGAAAATGATCACATGA 2526 0.4117 MNIFNVGEMGNKIIITTRDQSVALAMQTFLPIHYLTPLESEDCWSLLAKHAFGPSNSQQRSELEVVGREIAKICDGLPLAAVALGGLLRTKLSQNDWNKVLKSNIWVLPNRSENWEEVGEEYFDELVPRSLILRRTVGGEESFVMHDLINDLATMVSSAYCFRLDESKSHQSLERVCHLSYNKVVNELLPTMKQLRVLSLSHYRITELPNSIGNLIYLRYLNLSFTLIVKLPSVTCKLCNLQALLLSSCKNLTELLDDMGKLVNLRHLDISGTALEELPVQITRLQNLQTLSDFIVSEQHDGVKVADLGKFLHLQGKLSISQLQNVSNTLDASQANLKMKEQIDKLELTWNGNGAGLQIQSVVLEQLRPSTKLKSLTISGYGGTSFPNWLGDSSFGNMVSLYISDCDHCSWLPPLGELHSLKELFISGMKSVKIVGAEFYGSSAPSCQPFPFLEILRFRNMPEREEWKLIGGTSTEFPHLRRLSLTECPELKGNVPTNLPSLSELVLDRCGCLVESGHSNDNSLFQWMLPLHSLRKLRISDFPSLTSFPKDGLPKTLQYLDLAYCENLEFLPRESLHNYTSLEHLTIHNSCNSMTSFALGSLPVLKSLHLSYCENLKLIFIEEDASQSLSFLQNIYIDLCDELESFSPGGLPTPNLIHFSVSLCKKLYSLPEPIIAFPSLQKLQINRLPNLQSFAKEGLPINLRELGISRLGNTQVTEWSLESLTCLSVLQLYGDDIVNALMKMEVPLLPASIVSLTIYWLHDIECLDGKWLHHLTSLQTLEIIHSPNLKSFPEEGLPSSLQTLEIYNCPLLKASWQRKRGKEWVKIAHIPSIVIDKKMIT. 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07106 841 Gene3D - 37 125 IPR042197 -
Seca3g07106 841 ProSiteProfiles Leucine-rich repeat profile. 194 215 IPR001611 GO:0005515
Seca3g07106 841 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 556 811 - -
Seca3g07106 841 SMART LRR_typ_2 192 215 IPR003591 -
Seca3g07106 841 SMART LRR_typ_2 262 285 IPR003591 -
Seca3g07106 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 111 IPR027417 -
Seca3g07106 841 Gene3D Ribonuclease Inhibitor 698 820 IPR032675 -
Seca3g07106 841 Gene3D Ribonuclease Inhibitor 305 505 IPR032675 -
Seca3g07106 841 Gene3D Ribonuclease Inhibitor 554 697 IPR032675 -
Seca3g07106 841 Gene3D Ribonuclease Inhibitor 161 293 IPR032675 -
Seca3g07106 841 SUPERFAMILY L domain-like 136 589 - -
Seca3g07106 841 SUPERFAMILY L domain-like 525 827 - -
Seca3g07106 841 Pfam NB-ARC domain 7 102 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07106 Seca-Chr3 168015868 168018695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07106 187 291 WRKY Transcription Factor Family AT4G12020 36.792 2.46e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07106 - - tpra:123916222 1010.75