Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07097 ATGCACTACATAAGTCGATTCACAGCGGGCTTTATCATTGGTTTTGTCAGAGTGTGGCAAATCAGTTTAGTGACACTTGCAATTGTACCCTTGATTGCCCTTTCCGGTGGTCTTTATGCATATGTGACGATTGGACTTATTACAAATGTTAAGAAAGCATATGTGACGGCGGGTGAAATTGCCGAAGAGGTGATAGGCAATGTTAGAACCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATACAAAGCGGCTCTAATGGACACATATAGGAATGGTCGAAAAGCAGGTTTAGCAAAGGGCCTAGGACTAGGCACTTTGCAATGTGTCCTTTTTCTATCATGGGCTTTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGAGAGGCGTTCACTACCATGCTTAATGTGGTGATCTCTGGCTTGTCACTTGGGCAGGCAGCACCGGATATTTCTGCATTTATCCGAGCAAAGGCAGCAACTTATCCTATTTTTGAGATGATTGAGAGGGACACAATAAGAAAAATTAGCTCCATAAATGGTCAAAAATTAAGTCACTTGGAGGGTCACATCCAATTTATGGATGTCTTTTTTAGTTACCCATCTCGTCCTGATGTAGTAATCTTCAACAATCTTTGTCTTGACATTCCTTCTGGGAAAATTTTAGCCCTTGTTGGAGGAAGTGGTTCTGGAAAAAGCACAGTGATATCACTAATTGAGCGCTTCTATGAACCAATTTCTGGTCAAATACTATTAGATGGGTACAATATCAAGGAACTGGATCTGAAATGGCTTAGACAACAAATTGGGCTAGTTAGTCAAGAACCTGCACTTTTTGCTACAAGCATCAGGGAGAACATTTTGTATGGAAAAGACGATGTCAGTATTGAAGAACTAAATCTTGCTCTGAACCTTTCTGGTGCTCAGTCCTTCTTAAGCAATCTTCCCGATGGATTAGATACTCAGGTTGGTGAGAAAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATTGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCTACCATTAGAAATGCAAATATGATTGTTGTTGTTCAGGGAGGGAGTGTTGTAGAAATTGGAAACCATAATGAGCTCATTTCCAACCCAAATAGTGTATATGCATCTCTTATTCAAATCCAGAAGACTGACTCTTTTCAAGGCCACCCTTTTACGGATCCATGCTTGGGGCAATCATCAAGAATAATGCCCTCAGGAGAATCATCCCATGAAACAAGCATTGGTGGTAGTTTTGGTTCAGATAAAGAATCTATTGATGAGGTAGCAAGTGTTGAGAAGTCAAGGCATGTCTCAACAAAAAGACTATATTCCATGATTGCTCCTGACTGGTTTTATGGGGTTTTTGGAACATTTGGTGCATTTATTGCTGGATCCCTTATGCCACTTTTTGCTCTTGGAATATCTCATTCTCTGGTAGCATATTATATGGATTGGAATACAACACGTCATGAAGTGAAAAAAATTGCTTTTCTCTTCTGTGGGGCAGCAGTTGTAGCAATCATTGCCTATGCCTTTGAATATCTTTCTTTTGGAATCATGGGCCAACGACTTACCCTTCGTGTGAGAGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGCAACACAAGTTCTGTTCTTTCAGCACGTTTAGAGACTGATGCAACTTTATTACAAACTATAGTTGTTGATCGTTCTACAATTCTCTTACAAAATGTTGGTTTAGTTGTCACCTCATTTATTATTGCCTTTATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCAAAAAGCCAACATGTTGGCTGGGGAGGCAGTGAGTAATATACGTACTGTAACTGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAAAAGAGGCCAAATTGCTGGCATATTCTATGGCATTTCACAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCAGTCTTGTTGGAAAAGGAGCTTGGCAGCTTTAAATCAATTATGAAGGCATTTATGGTTTTAATTGTAACTGCAATGGCTATGGGGGAGACTTTGGCGTTGGCACCAGATCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGAAATAATGCATGATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTTAGCTACCTTCAAGGCCAGACATATTTATTTTTATTGATCTCAATCTAA 2556 0.3936 MHYISRFTAGFIIGFVRVWQISLVTLAIVPLIALSGGLYAYVTIGLITNVKKAYVTAGEIAEEVIGNVRTVQAFVGEERAVRSYKAALMDTYRNGRKAGLAKGLGLGTLQCVLFLSWALLAWFTSIVVHKNITNGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKAATYPIFEMIERDTIRKISSINGQKLSHLEGHIQFMDVFFSYPSRPDVVIFNNLCLDIPSGKILALVGGSGSGKSTVISLIERFYEPISGQILLDGYNIKELDLKWLRQQIGLVSQEPALFATSIRENILYGKDDVSIEELNLALNLSGAQSFLSNLPDGLDTQVGEKGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDCVMVGRTTVIVAHRLSTIRNANMIVVVQGGSVVEIGNHNELISNPNSVYASLIQIQKTDSFQGHPFTDPCLGQSSRIMPSGESSHETSIGGSFGSDKESIDEVASVEKSRHVSTKRLYSMIAPDWFYGVFGTFGAFIAGSLMPLFALGISHSLVAYYMDWNTTRHEVKKIAFLFCGAAVVAIIAYAFEYLSFGIMGQRLTLRVREIMFSAILKNEIGWFDDTSNTSSVLSARLETDATLLQTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYQKANMLAGEAVSNIRTVTAFCSEDKVLDLYANELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLLEKELGSFKSIMKAFMVLIVTAMAMGETLALAPDLLKGNQMVASIFEVMDRKTEIMHDVGEELMTVEGTIELKRIHFSYLQGQTYLFLLISI. 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07097 851 Gene3D - 197 469 IPR027417 -
Seca3g07097 851 Gene3D ABC transporter type 1, transmembrane domain 2 805 IPR036640 GO:0005524|GO:0016020
Seca3g07097 851 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07097 851 SUPERFAMILY ABC transporter transmembrane region 496 813 IPR036640 GO:0005524|GO:0016020
Seca3g07097 851 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Seca3g07097 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 437 IPR027417 -
Seca3g07097 851 CDD ABC_MTABC3_MDL1_MDL2 199 437 - -
Seca3g07097 851 PANTHER ABC TRANSPORTER B FAMILY 2 436 IPR039421 -
Seca3g07097 851 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 172 - -
Seca3g07097 851 FunFam ABC transporter B family member 1 189 438 - -
Seca3g07097 851 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 199 435 IPR003439 GO:0005524
Seca3g07097 851 SUPERFAMILY ABC transporter transmembrane region 5 177 IPR036640 GO:0005524|GO:0016020
Seca3g07097 851 MobiDBLite consensus disorder prediction 458 475 - -
Seca3g07097 851 Pfam ABC transporter transmembrane region 2 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07097 851 Pfam ABC transporter transmembrane region 511 782 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07097 851 CDD ABC_6TM_Pgp_ABCB1_D2_like 499 814 - -
Seca3g07097 851 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 510 796 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07097 851 SMART AAA_5 226 418 IPR003593 GO:0016887
Seca3g07097 851 MobiDBLite consensus disorder prediction 458 477 - -
Seca3g07097 851 Pfam ABC transporter 218 366 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07097 Seca-Chr3 167804582 167810167 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07097 1 838 Calmodulin-binding Proteins AT2G36910 46.544 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07097 K05658 - gmx:100809752 1344.33