Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g07087 | ATGCACTACATAAGTCGATTCACAGCGGGCTTTATCATTGGTTTTGTCAGAGTGTGGCAAATCAGTTTAGTGACACTTGCAATTGTACCCTTGATTGCCCTTTCAGGTGGTCTTTATGCATATGTGACGATTGGACTTATTACAAATGTTAAGAAAGCATATGTGACGGCGGGTGAAATTGCCGAAGAGGTGATAGGCAATGTTAGAACCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATACAAAGCGGCTCTAATGGACACATATAGGAATGGTCGAAAAGCAGGTTTAGCAAAGGGCCTAGGACTAGGCACTTTGCAATGTGTCCTTTTTCTATCATGGGCTTTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGAGAGGCGTTCACTACCATGCTTAATGTGGTGATCTCTGGCTTGTCACTTGGGCAGGCAGCACCGGATATTTCTGCATTTATCCGAGCAAAGGCAACAACTTATCCTATTTTTGAGATGATTGAGAGGGACACAGTTGGTGAGAAAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATTGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCTACCATTAGAAATGCAAATATGATTGTTGTTGTTCAGGGAGGGAGTGTTGTAGAAATTGGAAACCATAATGAGCTCATTTCCAACCCAAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGACTGACTCTTTTCAAGGCCACCCTTTTACGGATCCATGCTTGGGGCAATCATCAAGAATAATGCCCTCAGGAGAATCATCCCATGAAACAAGCATTGGTGGTAGTTTTGGTTCAGATAAAGAATCTATTGATGAGGTAGCAAGTGTTGAGAAGTCAAGGCATGTCTCAACAAAAAGACTATATTCCATGATTGCTCCTGACTGGTTTTATGGGGTTTTTGGAACATTTGGTGCATTTATTGCTGGATCCCTTATGCCACTTTTTGCTCTTGGAATATCTCATTCTCTGGTAGCATATTATATGGATTGGAATACAACACGTCATGAAGTGAAAAAAATTGCTTTTCTCTTCTGTGGGGCAGCAGTTGTAGCAATCATTGCCTATGCCTTTGAATATCTTTCTTTTGGAATCATGGGCCAACGACTTACCCTTCGTGTGAGAGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGCAACACAAGTTCTGTTCTTTCAGCATGTTTAGAGACTGATGCAACTTTATTACAAACTATAGTTGTTGATCGTTCTACAATTCTCTTACAAAATGTTGGTTTAGTTGTCACCTCATTTATTATTGCCTTTATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCAAAAAGCCAACATGTTGGCTGGGGAGGCAGTGAGTAATATACGTACTGTAGCTGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAAAAGAGGCCAAATTGCTGGCATATTCTATGGCATTTCACAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCAGTCTTGTTGGAAAAGGAGCTTGGCAGCTTTAAATCAATTATGAAGGCATTTATGGTTTTAATTGTAACTGCACTGGCTATGGGGGAGACTTTGACGTTGGTACCAGATCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGAAATAATGCATGATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTTAGCTACCCTTCAAGGCCAGACATGTTTATTTTTATTGATCTCAATCTAACAGTGCCTGCAGGAAAGAGTATTGCCTTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAGTAATCTCCCTTATACTTAGGTTTTATGACCCAACATCTGGCAAGGTGATGATTGATGGAAAAGACATCAGGAAAATAAATTTGAAATCGCTCAGGAAACATATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATTTATGAAAATATTCTTTATGGGAAGGAAGGAGCCTCTGAATCAGAAGTAATTGAAGCAGCAAAACTTGCTAATGCTCATGGTTTTATCAGTGTTCTTCCTGAGGGCTACTCCACCAATGTAGGTGAGAGAGGAATTCAACTATCTGGTGGCCAGAAACAAAGAGTAGCTATTGCCAGGGCTATTTTGAGAAACCCTGAAATCTTATTGCTAGATGAAGCCACCAGTGCCTTGGATATAGAGTCAGAGCGTATGGTGCAACAAGCTTTAGAAAAATTGATGCAAAACAGAACAACAGTTATGGTGGCACATAGGCTATCAACAATAAGGAATGCATATCAAATATCAGTTTTACAAGGTGGAAAGATAATTGAGCAAGGCACCCATTCAAGTCTTATAGAGAACACCACAGGAACTTACTTCAAACTAGTCAGCCTTCAACAACAACAACAACATATATAA | 2772 | 0.3968 | MHYISRFTAGFIIGFVRVWQISLVTLAIVPLIALSGGLYAYVTIGLITNVKKAYVTAGEIAEEVIGNVRTVQAFVGEERAVRSYKAALMDTYRNGRKAGLAKGLGLGTLQCVLFLSWALLAWFTSIVVHKNITNGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKATTYPIFEMIERDTVGEKGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDCVMVGRTTVIVAHRLSTIRNANMIVVVQGGSVVEIGNHNELISNPNSVYASLVQIQETDSFQGHPFTDPCLGQSSRIMPSGESSHETSIGGSFGSDKESIDEVASVEKSRHVSTKRLYSMIAPDWFYGVFGTFGAFIAGSLMPLFALGISHSLVAYYMDWNTTRHEVKKIAFLFCGAAVVAIIAYAFEYLSFGIMGQRLTLRVREIMFSAILKNEIGWFDDTSNTSSVLSACLETDATLLQTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYQKANMLAGEAVSNIRTVAAFCSEDKVLDLYANELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLLEKELGSFKSIMKAFMVLIVTALAMGETLTLVPDLLKGNQMVASIFEVMDRKTEIMHDVGEELMTVEGTIELKRIHFSYPSRPDMFIFIDLNLTVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGKVMIDGKDIRKINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASESEVIEAAKLANAHGFISVLPEGYSTNVGERGIQLSGGQKQRVAIARAILRNPEILLLDEATSALDIESERMVQQALEKLMQNRTTVMVAHRLSTIRNAYQISVLQGGKIIEQGTHSSLIENTTGTYFKLVSLQQQQQHI. | 924 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g07087 | 923 | MobiDBLite | consensus disorder prediction | 308 | 325 | - | - | |
Seca3g07087 | 923 | Pfam | ABC transporter | 176 | 216 | IPR003439 | GO:0005524 | |
Seca3g07087 | 923 | SMART | AAA_5 | 706 | 898 | IPR003593 | GO:0016887 | |
Seca3g07087 | 923 | SMART | AAA_5 | 135 | 268 | IPR003593 | GO:0016887 | |
Seca3g07087 | 923 | ProSitePatterns | ABC transporters family signature. | 818 | 832 | IPR017871 | GO:0005524|GO:0016887 | |
Seca3g07087 | 923 | Gene3D | - | 670 | 923 | IPR027417 | - | |
Seca3g07087 | 923 | Pfam | ABC transporter | 699 | 846 | IPR003439 | GO:0005524 | |
Seca3g07087 | 923 | Gene3D | ABC transporter type 1, transmembrane domain | 320 | 649 | IPR036640 | GO:0005524|GO:0016020 | |
Seca3g07087 | 923 | ProSitePatterns | ABC transporters family signature. | 188 | 202 | IPR017871 | GO:0005524|GO:0016887 | |
Seca3g07087 | 923 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 672 | 917 | IPR027417 | - | |
Seca3g07087 | 923 | Gene3D | - | 180 | 319 | IPR027417 | - | |
Seca3g07087 | 923 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 68 | 285 | IPR003439 | GO:0005524 | |
Seca3g07087 | 923 | SUPERFAMILY | ABC transporter transmembrane region | 346 | 663 | IPR036640 | GO:0005524|GO:0016020 | |
Seca3g07087 | 923 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 679 | 915 | IPR003439 | GO:0005524 | |
Seca3g07087 | 923 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 349 | 664 | - | - | |
Seca3g07087 | 923 | FunFam | ABC transporter B family member 4 | 669 | 922 | - | - | |
Seca3g07087 | 923 | SUPERFAMILY | ABC transporter transmembrane region | 5 | 178 | IPR036640 | GO:0005524|GO:0016020 | |
Seca3g07087 | 923 | CDD | ABC_MTABC3_MDL1_MDL2 | 679 | 917 | - | - | |
Seca3g07087 | 923 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 179 | 287 | IPR027417 | - | |
Seca3g07087 | 923 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1 | 164 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca3g07087 | 923 | MobiDBLite | consensus disorder prediction | 308 | 327 | - | - | |
Seca3g07087 | 923 | PANTHER | ABC TRANSPORTER B FAMILY | 332 | 917 | IPR039421 | - | |
Seca3g07087 | 923 | Pfam | ABC transporter transmembrane region | 361 | 632 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca3g07087 | 923 | Pfam | ABC transporter transmembrane region | 2 | 148 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca3g07087 | 923 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 2 | 167 | - | - | |
Seca3g07087 | 923 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 360 | 646 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca3g07087 | 923 | Gene3D | ABC transporter type 1, transmembrane domain | 2 | 179 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g07087 | Seca-Chr3 | 167658542 | 167663882 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g07087 | 181 | 918 | Calmodulin-binding Proteins | AT2G36910 | 50.195 | 0.0 | 726 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g07087 | K05658 | - | gmx:100819045 | 1179.47 |