Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07087 ATGCACTACATAAGTCGATTCACAGCGGGCTTTATCATTGGTTTTGTCAGAGTGTGGCAAATCAGTTTAGTGACACTTGCAATTGTACCCTTGATTGCCCTTTCAGGTGGTCTTTATGCATATGTGACGATTGGACTTATTACAAATGTTAAGAAAGCATATGTGACGGCGGGTGAAATTGCCGAAGAGGTGATAGGCAATGTTAGAACCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATACAAAGCGGCTCTAATGGACACATATAGGAATGGTCGAAAAGCAGGTTTAGCAAAGGGCCTAGGACTAGGCACTTTGCAATGTGTCCTTTTTCTATCATGGGCTTTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGAGAGGCGTTCACTACCATGCTTAATGTGGTGATCTCTGGCTTGTCACTTGGGCAGGCAGCACCGGATATTTCTGCATTTATCCGAGCAAAGGCAACAACTTATCCTATTTTTGAGATGATTGAGAGGGACACAGTTGGTGAGAAAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATTGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCTACCATTAGAAATGCAAATATGATTGTTGTTGTTCAGGGAGGGAGTGTTGTAGAAATTGGAAACCATAATGAGCTCATTTCCAACCCAAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGACTGACTCTTTTCAAGGCCACCCTTTTACGGATCCATGCTTGGGGCAATCATCAAGAATAATGCCCTCAGGAGAATCATCCCATGAAACAAGCATTGGTGGTAGTTTTGGTTCAGATAAAGAATCTATTGATGAGGTAGCAAGTGTTGAGAAGTCAAGGCATGTCTCAACAAAAAGACTATATTCCATGATTGCTCCTGACTGGTTTTATGGGGTTTTTGGAACATTTGGTGCATTTATTGCTGGATCCCTTATGCCACTTTTTGCTCTTGGAATATCTCATTCTCTGGTAGCATATTATATGGATTGGAATACAACACGTCATGAAGTGAAAAAAATTGCTTTTCTCTTCTGTGGGGCAGCAGTTGTAGCAATCATTGCCTATGCCTTTGAATATCTTTCTTTTGGAATCATGGGCCAACGACTTACCCTTCGTGTGAGAGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGCAACACAAGTTCTGTTCTTTCAGCATGTTTAGAGACTGATGCAACTTTATTACAAACTATAGTTGTTGATCGTTCTACAATTCTCTTACAAAATGTTGGTTTAGTTGTCACCTCATTTATTATTGCCTTTATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCAAAAAGCCAACATGTTGGCTGGGGAGGCAGTGAGTAATATACGTACTGTAGCTGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGAGCCTTCCAAACGTTCATTCAAAAGAGGCCAAATTGCTGGCATATTCTATGGCATTTCACAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCAGTCTTGTTGGAAAAGGAGCTTGGCAGCTTTAAATCAATTATGAAGGCATTTATGGTTTTAATTGTAACTGCACTGGCTATGGGGGAGACTTTGACGTTGGTACCAGATCTTTTGAAAGGAAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACAGAAATAATGCATGATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTTAGCTACCCTTCAAGGCCAGACATGTTTATTTTTATTGATCTCAATCTAACAGTGCCTGCAGGAAAGAGTATTGCCTTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAGTAATCTCCCTTATACTTAGGTTTTATGACCCAACATCTGGCAAGGTGATGATTGATGGAAAAGACATCAGGAAAATAAATTTGAAATCGCTCAGGAAACATATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATTTATGAAAATATTCTTTATGGGAAGGAAGGAGCCTCTGAATCAGAAGTAATTGAAGCAGCAAAACTTGCTAATGCTCATGGTTTTATCAGTGTTCTTCCTGAGGGCTACTCCACCAATGTAGGTGAGAGAGGAATTCAACTATCTGGTGGCCAGAAACAAAGAGTAGCTATTGCCAGGGCTATTTTGAGAAACCCTGAAATCTTATTGCTAGATGAAGCCACCAGTGCCTTGGATATAGAGTCAGAGCGTATGGTGCAACAAGCTTTAGAAAAATTGATGCAAAACAGAACAACAGTTATGGTGGCACATAGGCTATCAACAATAAGGAATGCATATCAAATATCAGTTTTACAAGGTGGAAAGATAATTGAGCAAGGCACCCATTCAAGTCTTATAGAGAACACCACAGGAACTTACTTCAAACTAGTCAGCCTTCAACAACAACAACAACATATATAA 2772 0.3968 MHYISRFTAGFIIGFVRVWQISLVTLAIVPLIALSGGLYAYVTIGLITNVKKAYVTAGEIAEEVIGNVRTVQAFVGEERAVRSYKAALMDTYRNGRKAGLAKGLGLGTLQCVLFLSWALLAWFTSIVVHKNITNGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKATTYPIFEMIERDTVGEKGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDCVMVGRTTVIVAHRLSTIRNANMIVVVQGGSVVEIGNHNELISNPNSVYASLVQIQETDSFQGHPFTDPCLGQSSRIMPSGESSHETSIGGSFGSDKESIDEVASVEKSRHVSTKRLYSMIAPDWFYGVFGTFGAFIAGSLMPLFALGISHSLVAYYMDWNTTRHEVKKIAFLFCGAAVVAIIAYAFEYLSFGIMGQRLTLRVREIMFSAILKNEIGWFDDTSNTSSVLSACLETDATLLQTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYQKANMLAGEAVSNIRTVAAFCSEDKVLDLYANELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGLALWYGSVLLEKELGSFKSIMKAFMVLIVTALAMGETLTLVPDLLKGNQMVASIFEVMDRKTEIMHDVGEELMTVEGTIELKRIHFSYPSRPDMFIFIDLNLTVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGKVMIDGKDIRKINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASESEVIEAAKLANAHGFISVLPEGYSTNVGERGIQLSGGQKQRVAIARAILRNPEILLLDEATSALDIESERMVQQALEKLMQNRTTVMVAHRLSTIRNAYQISVLQGGKIIEQGTHSSLIENTTGTYFKLVSLQQQQQHI. 924
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07087 923 MobiDBLite consensus disorder prediction 308 325 - -
Seca3g07087 923 Pfam ABC transporter 176 216 IPR003439 GO:0005524
Seca3g07087 923 SMART AAA_5 706 898 IPR003593 GO:0016887
Seca3g07087 923 SMART AAA_5 135 268 IPR003593 GO:0016887
Seca3g07087 923 ProSitePatterns ABC transporters family signature. 818 832 IPR017871 GO:0005524|GO:0016887
Seca3g07087 923 Gene3D - 670 923 IPR027417 -
Seca3g07087 923 Pfam ABC transporter 699 846 IPR003439 GO:0005524
Seca3g07087 923 Gene3D ABC transporter type 1, transmembrane domain 320 649 IPR036640 GO:0005524|GO:0016020
Seca3g07087 923 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Seca3g07087 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 917 IPR027417 -
Seca3g07087 923 Gene3D - 180 319 IPR027417 -
Seca3g07087 923 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 285 IPR003439 GO:0005524
Seca3g07087 923 SUPERFAMILY ABC transporter transmembrane region 346 663 IPR036640 GO:0005524|GO:0016020
Seca3g07087 923 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 679 915 IPR003439 GO:0005524
Seca3g07087 923 CDD ABC_6TM_Pgp_ABCB1_D2_like 349 664 - -
Seca3g07087 923 FunFam ABC transporter B family member 4 669 922 - -
Seca3g07087 923 SUPERFAMILY ABC transporter transmembrane region 5 178 IPR036640 GO:0005524|GO:0016020
Seca3g07087 923 CDD ABC_MTABC3_MDL1_MDL2 679 917 - -
Seca3g07087 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 287 IPR027417 -
Seca3g07087 923 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07087 923 MobiDBLite consensus disorder prediction 308 327 - -
Seca3g07087 923 PANTHER ABC TRANSPORTER B FAMILY 332 917 IPR039421 -
Seca3g07087 923 Pfam ABC transporter transmembrane region 361 632 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07087 923 Pfam ABC transporter transmembrane region 2 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07087 923 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 167 - -
Seca3g07087 923 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 360 646 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g07087 923 Gene3D ABC transporter type 1, transmembrane domain 2 179 IPR036640 GO:0005524|GO:0016020
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g07087 Seca-Chr3 167658542 167663882 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07087 181 918 Calmodulin-binding Proteins AT2G36910 50.195 0.0 726
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07087 K05658 - gmx:100819045 1179.47