Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07084 ATGGATTCTAATTATGAAGAGGTTCAGCTTCCAAAATGTTCACCTCATGAAGCAACAGAGGATGATGCATGCCTCTCTGCCATGCAGCTCTGTTTTGGTCCAGTGGTCTATACAGCAGCATTGAATGCTGCCCTTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAACACCACCTGGTGTGTCTGCCTCTGAGATTTCTTCACAATTTCCAACACAGCACACAGAATTGCCACGCAGGCTTGACCGCATGCTCTGTTTGCTTGCAAGCCACTCTCTTCTTAATTGTTCAACGCGCACAAATGAAAGCGGTGAGATTGAAAGGCTTTATGAACTATCACCGATTGGTAAATACTTTGTCAATGATGACAAGAGTGGTTCTGTGGCTTTATTCTCAACATTTATGAGTCACCGAACGCTGCTTGAAGCATTCCTTAATTTTAAGGAGGTACTGTTGGATTGTGATAATGGCCTATACATGAAAGTTCATGGAATGCCTGTTTATCAAGGGATACAGTCTGATCCGGCTTGGAATCATGTTTTTAACAAAGCAATGGCCAATATTTGCACAATTGAGATGACCAAAATACTTGAAAAGTACAGTGGATTTGAAGGAATATCATTGCTGGTTGATGTGGGAGGAGGAATTGGGCAAAGTTTGAATATGGTAATCTCCAAATATCCTTCAATGAAGGGTATTAATTTTGATCTTCCCCAAGTAATACAAAATGCTCCAGCTTATCTAGGGATTGAGCATGTTGAAGGAGACATGTTTGAAAATGTTCCAAGAGGTGATGCCATAATATTGAAGGCCGTATTGCACAATTGGTCAGATGAAAACTGTTTAAAAGTCCTAAGTAATTGCTACAAAGCTTTGCCACAAAAGGGGAAGGTGATAGTCATTGATTTCATCATGCCTCAAGTAATTCAGTCTACCACAGCAGATAAGATGGTTACTAGCTTTGACAATCTCATGTTTCTAGATGGTGGCTTTGAAAGAACAGAAAAGGAATTTGAGAATTTATGCAAGAGCTCAGGCTTCTGTTGTTTTCAAGTTATTTGTTGTGCCTTTTCTGCTCTAGGAGTGATGGAATTTTATAAATTAAAGGTTCAGCTTCCAAATGGAACAGCTCATGAAGCAACAGAGGATGATGCATGCCTCTCTGCAATGCAGCTCTGTTTTGGTCCAATGGTTTATTCAGCAGCATTGAATGCTGCCATTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAACACCACCTGGTGTGTCTGCCTCTGAGATTTCTTCACAATTTCCAACACAGCACACAGAATTGCCACGAAGGCTTGATCGTATGCTCTGTTTGCTTGCAAGCCACTCCCTTCTTAATTGTTCTAAGGGCACAAATGAAGATGGTGAGATTGAAAGACTTTATGAATTATCACAGACTGGTAAATACTTTGTCAGTGGTCAGAACAGTGGCTCTGTGGCTTTCTTCTCAAAATTCGTTACTCACCGAACGCTACTTGATGCATTCCTTAATTTTAAGGAGGTACTGTTGGATTGTGATAATGGCCTATACATGAAAGTTCATGGAATGCCTGTTTATCAAGGGATACAGTCTGATCCGGCTTGGAATCATGTTTTTAACAAAGCAATGGCCAATATTTGCACAATTGAGATGACAAAAATACTTGAGAAGTATAGGGGGTTTGAAGCAATGTCATTGCTAGTTGATGTGGGAGGTGGAGTTGGGCAAAGTTTGAATATGATAATCTCCAAATATCCTTCAATGAAGGGTATTAATTTTGATCTGCCCCAAGTAATTCAAAATGCCCCAGCTTATCCAGGGATTGAGCATGTTGAAGGAGACATGTTTGAAAGTGTTCCAGGAGGTGATGCCATAATATTGAAGGCCGTATTGCACAATTGGTCTGATGAGAAGTGTTTAAAAGTTCTAAACAATTGCTACGAAGCTTTGCCACAAAAGGGGAAGGTGATAGTCATTGATTTCATCATGCCTCAAGTAATTCAGTCTACAAAAGCAGATAAGATGGTTACTAGCTTTGACAATCTCATGTTTCTAGATGGTGGCTTTGAAAGAACAGAAAAGGAATTCGAGAATTTATGCAAAAGCTCAGGATTCTCTGGTTTTCAAGTTGTCTTTCGTGCCTTCTCTGCTCTAGGAGTGATGGAATTTTATAAATAA 2190 0.4005 MDSNYEEVQLPKCSPHEATEDDACLSAMQLCFGPVVYTAALNAALELNLFEIIAKATPPGVSASEISSQFPTQHTELPRRLDRMLCLLASHSLLNCSTRTNESGEIERLYELSPIGKYFVNDDKSGSVALFSTFMSHRTLLEAFLNFKEVLLDCDNGLYMKVHGMPVYQGIQSDPAWNHVFNKAMANICTIEMTKILEKYSGFEGISLLVDVGGGIGQSLNMVISKYPSMKGINFDLPQVIQNAPAYLGIEHVEGDMFENVPRGDAIILKAVLHNWSDENCLKVLSNCYKALPQKGKVIVIDFIMPQVIQSTTADKMVTSFDNLMFLDGGFERTEKEFENLCKSSGFCCFQVICCAFSALGVMEFYKLKVQLPNGTAHEATEDDACLSAMQLCFGPMVYSAALNAAIELNLFEIIAKATPPGVSASEISSQFPTQHTELPRRLDRMLCLLASHSLLNCSKGTNEDGEIERLYELSQTGKYFVSGQNSGSVAFFSKFVTHRTLLDAFLNFKEVLLDCDNGLYMKVHGMPVYQGIQSDPAWNHVFNKAMANICTIEMTKILEKYRGFEAMSLLVDVGGGVGQSLNMIISKYPSMKGINFDLPQVIQNAPAYPGIEHVEGDMFESVPGGDAIILKAVLHNWSDEKCLKVLNNCYEALPQKGKVIVIDFIMPQVIQSTKADKMVTSFDNLMFLDGGFERTEKEFENLCKSSGFSGFQVVFRAFSALGVMEFYK. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07084 729 Gene3D - 398 558 IPR036388 -
Seca3g07084 729 Gene3D Vaccinia Virus protein VP39 178 356 IPR029063 -
Seca3g07084 729 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 367 IPR016461 GO:0008168
Seca3g07084 729 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 391 729 IPR016461 GO:0008168
Seca3g07084 729 Gene3D Vaccinia Virus protein VP39 540 717 IPR029063 -
Seca3g07084 729 SUPERFAMILY "Winged helix" DNA-binding domain 382 484 IPR036390 -
Seca3g07084 729 FunFam Caffeic acid 3-O-methyltransferase 371 481 - -
Seca3g07084 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 488 721 IPR029063 -
Seca3g07084 729 SUPERFAMILY "Winged helix" DNA-binding domain 20 122 IPR036390 -
Seca3g07084 729 Gene3D - 36 196 IPR036388 -
Seca3g07084 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 365 IPR029063 -
Seca3g07084 729 FunFam Caffeic acid 3-O-methyltransferase 6 119 - -
Seca3g07084 729 Pfam O-methyltransferase domain 511 710 IPR001077 GO:0008171
Seca3g07084 729 Pfam O-methyltransferase domain 149 347 IPR001077 GO:0008171
Seca3g07084 729 PANTHER O-METHYLTRANSFERASE 399 719 IPR016461 GO:0008168
Seca3g07084 729 Pfam Dimerisation domain 40 89 IPR012967 GO:0046983
Seca3g07084 729 Pfam Dimerisation domain 402 451 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07084 Seca-Chr3 167542614 167557020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07084 376 729 Monolignol Biosynthesis Gene Families AT5G54160 46.779 1.30e-101 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07084 - - gmx:100784030 604.364