Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07072 ATGCGTGTTCTTGCTGTTGACGACGACCAAACTGATCTAAAAGTGTTGGAGAACTTGCTTCGCAAATGCCAGTATCATGATCCTGGTTTTCAATTAAAGAATTTCTTTCTTGTTACTACAACTACTCGGGCAATTAAGGCTCTAGAAATGTTAAGGAAAAACAAAAATGAGTTTGAGCTTGTTATTAGTGATGTAAATATGGCATATATGGATGATTTCAAATTTTTTGAACAAGTAGTACTTGAAACGGACTTACTAATAATCATTGCAAAGGCTTATCCAAGGAGATTATTAGAGTTGATGAATATTAAAGGGCTTACAAAAGAGCACGTAGCAAGCCATCTCCCGAAATATAGATTGAGTTTGAAAAGGCCAACTCAACAGAGTTGGATCAATGAATATGGAGATTTTGGAACCCTATTTGAATCAAGAAAAATTTTAGAAAACAAACTCCCATCATACGGATCCTATGGAACATGCAAGCTGAGCTCTCCCCATGGTATGAACTTATCAATAATGAAGTCGTTTGTTTCGTCTCAGAACATTCTCACCTCCACGGAAACACATAATTCAAAAGTATTTCATTCTTCCGTTGATGCTTCTTCGGTCAATGTTGAATCCGTTGACACTGACATTTGTGTTGATTTATTAGGGTATTGGCCTAATGAAGCTTGGAGCGGGACTCGGACTCAGTTATCTAACTTTTCAGTTCATTCAACTCCATCGAGTGAGGTTTTCAACAATGATCAACATACTCATGATTCCTTGAACTTTTCCTCCTCCACTTTTCCTAGTAAGAAATCTATAGTAGATTTTTCTTCCCAAAGTGATGTTGCTGATTTTTTAGAGGATGTTAGAGTTGAGATACAATGCCAAGAAAACTTACTTGAAAATACCTTCCACCAGCAGTGGTGTTGGTTCTCCTTTGGAGGATGTTAG 939 0.3706 MRVLAVDDDQTDLKVLENLLRKCQYHDPGFQLKNFFLVTTTTRAIKALEMLRKNKNEFELVISDVNMAYMDDFKFFEQVVLETDLLIIIAKAYPRRLLELMNIKGLTKEHVASHLPKYRLSLKRPTQQSWINEYGDFGTLFESRKILENKLPSYGSYGTCKLSSPHGMNLSIMKSFVSSQNILTSTETHNSKVFHSSVDASSVNVESVDTDICVDLLGYWPNEAWSGTRTQLSNFSVHSTPSSEVFNNDQHTHDSLNFSSSTFPSKKSIVDFSSQSDVADFLEDVRVEIQCQENLLENTFHQQWCWFSFGGC. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07072 312 Gene3D - 1 112 - -
Seca3g07072 312 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 90 IPR045279 GO:0009736
Seca3g07072 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 120 IPR006447 GO:0003677
Seca3g07072 312 SUPERFAMILY CheY-like 1 90 IPR011006 -
Seca3g07072 312 ProSiteProfiles Response regulatory domain profile. 2 123 IPR001789 GO:0000160
Seca3g07072 312 SUPERFAMILY Homeodomain-like 90 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07072 Seca-Chr3 167202386 167204481 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07072 1 93 Response Regulator Gene Family AT2G25180 60.215 1.44e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g07072 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07072 - K14491 cic:CICLE_v10033605mg 121.324