Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07061 ATGAATGGGGAAGAAAGGGCCAAATACCTGACCCATATTCTTAATGCCTGTGCTAAGTTTATTGAATCAGGCAGCATAATGAATGCAGATACTGCACTAGACTATATTGCTCACAGTGCCTCCCCTGATGGTGATGCAATGCAGCGAGTAGCCACCTATGTCAGTGAAGGGCTAGCTTTCCAAATGCTGAAAAATTTGCAAGGTGTACCTAAAGCTTTAAGTTTGCCAAAAACATTGTCAACCTCAGAGGAACTCCTTGTTAAGAATTTATTCTTTCAGTTGTATCCATTTTTAAAGATTGCATATGTGATCACAAGTCATGCCATTACTGAAGCCATGGAAGGGGAAGAAGTGATCCATATCATTGATCTCAGTGCATCTGACACTGCTCAGTGGATCTGTCTTATGCAGAGATTGAATGAGCGTCAGAAGAAGCCACTACTTCTGAAAATTACAGGCATTCATGAGAACAAGGAAGTTTTAGAGCAAATGGACCTTCACTTGAGAGTAGAAGCTGGGCAATGCAATTTCAAATTCCAATTCAATTCTATTGTAAGCACTTTGGCAAATCTTGACCTTGAAAGCTTGCCTGTGGTGAAAGGAGAGCCTCTTGCAATCAGTTCAGTTCTTCAGCTGCACTCACTTCTGGCCACTGATGATCCAATGGTCTGCAGCACTAGCAGGAACACCCCATCAGAACCTATGAATCAAAAGACTTTTGGAGAGGTTCTTGGGAAACCAAATCTCAACCTGGGTCCTGAATCATCATTGTTACAACTTTCTATGTGTGGTTCTTCACAAAAGATGGGGTGTTTTCTAGATGGCCTGAGTAAACTCCAACCTAGACTGGTGGTGATTACTGAACAAGAATCCAATGTTAATGGTTCTTCTTTGACAGAAAGGGTTGACAAAGCAGTGGACTTTTATGTTTCCATGTTCAACTGCTTGGAATCAACTGTTGCAATGTTCAATTGCTTGGAATCAACTGATTCAGAAACAGTGGTAAAGAGAATCATACTGGAGAGGACTCTACTAGGGGAGGAAATAAAGAACATTGTTTCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTTGAGACTTGGATCCCAAGGCTTGAATTGGCTGGGTTTGTGAGGGTACCTATCAGTTATGATTGGATGATGCAGGCAAAAAAGGAGTTGCATGGCTATGGAAATGGACATAAGCTTCTTCAGGAGAATAAATGTTTGTTTGTCTGCTGGAATGATAAGCCACTCTTTTCTGTATCGGTCTGGAAGATTTAG 1290 0.4147 MNGEERAKYLTHILNACAKFIESGSIMNADTALDYIAHSASPDGDAMQRVATYVSEGLAFQMLKNLQGVPKALSLPKTLSTSEELLVKNLFFQLYPFLKIAYVITSHAITEAMEGEEVIHIIDLSASDTAQWICLMQRLNERQKKPLLLKITGIHENKEVLEQMDLHLRVEAGQCNFKFQFNSIVSTLANLDLESLPVVKGEPLAISSVLQLHSLLATDDPMVCSTSRNTPSEPMNQKTFGEVLGKPNLNLGPESSLLQLSMCGSSQKMGCFLDGLSKLQPRLVVITEQESNVNGSSLTERVDKAVDFYVSMFNCLESTVAMFNCLESTDSETVVKRIILERTLLGEEIKNIVSCEGVERKERHEKLETWIPRLELAGFVRVPISYDWMMQAKKELHGYGNGHKLLQENKCLFVCWNDKPLFSVSVWKI. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07061 429 ProSiteProfiles GRAS family profile. 1 428 IPR005202 -
Seca3g07061 429 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 424 IPR005202 -
Seca3g07061 429 Pfam GRAS domain family 10 428 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07061 Seca-Chr3 167093810 167096522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07061 4 428 GRAS Transcription Factor Family AT1G50420 44.570 7.94e-126 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g07061 GRAS 1.4e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07061 - - zju:107417805 435.261