Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07060 ATGATTACAAATATTTCTCAAGAGTGTGCTTTACCAGTTTTTGTGATAAAACTATCTCTTATATTACATACACCATACCAGTTGCTCAAAGATAAGAATGGGGAAGAAAGGGGCAAATACCTGACCCATATTCTTAACGCCTGTTCTAAGTTGATTGAGTCAGGCAGCATAATGAATGCAGATACTGCACTAGACTACATTGCTCACAGTGCCTCTCCTGATGGTGATGCAATGCAGCCAGTAGCCACCTATGTCAGTGAAGGGCTAGCTTTCCAAATGCTGAAAAATTTGCAAGGTGTACCTAAAGCTTTAAGTTTGCCAAAAACATTGTCAACCTCAGAAGAACTACTTCTTAAGAATTTATTCTTTCGGTTGTCAACCTCAGAGGAACTATAG 396 0.3914 MITNISQECALPVFVIKLSLILHTPYQLLKDKNGEERGKYLTHILNACSKLIESGSIMNADTALDYIAHSASPDGDAMQPVATYVSEGLAFQMLKNLQGVPKALSLPKTLSTSEELLLKNLFFRLSTSEEL. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07060 131 ProSiteProfiles GRAS family profile. 32 131 IPR005202 -
Seca3g07060 131 Pfam GRAS domain family 41 124 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07060 Seca-Chr3 167054792 167055321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07060 24 125 GRAS Transcription Factor Family AT1G50420 45.192 2.03e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g07060 GRAS 7.5e-10 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07060 - - zju:107417805 103.219