Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07058 ATGAGGGAGCTAAGATGGGACTCTCAGGGCTTAAATCCAATAAGCCTTCTTATTGAGTGTGCTAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGACTTGAGTATATTTCTCAGATTTCATCTCCTGATGGAGATGCAGTGCAAAGGATGGTCACTTATTTCAGTAAAGCACTTGGATACAGGATAGTCAAACATTTGCCTGGTGTATATAAAGCTCTAAATTCCTCAAAAACATCATTGTCTTCAGAAGACATCCTTATTCAGAAATACTTCTATGAATTGTGTCCCTTTTTGAAGTTTTCATACCTGATCACAAATCAAGCCATTATAGAAGCTATGGAATGTGAAAAGGTGGTTCACATTATTGACCTTCATTGTTCTGAGCCAGCTCAATGGATAAATCTTCTGCTAACTTTAAAGGACCGTCCAGGAGGCCCACCCCATCTCAAAATTACAGGCATTCATGAAAAGAAGGAGGTTTTAGACCAAATGAGCTTTCATTTGACAACTGAAGCTGGAAATTTAGATTTCCCTTTACAGTTCAATCCAATTGTTAGCAAACTTGAAGATGTTGATTTTGAAAACTTGCCTGTCAAGACAGGAGAAGCTCTTGCAATTACTTCAGTTCTTCAGCTGCATTTTCTTCTTGCCACTGATGATGAAATGGTTGGGAGGATCTCACCAGCAGCAGCAGCATCAATGAATCTGCAGAGAGCAGTGCACATGGGCCAAAGGACTTTTGCAGAATGGCTTGAGAGAGATATGATCAATGCATATATCTTAAGTCCTGATTCTGCATTATCACCTCTTTCTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAATGCTATGCGAAAACTCCAACCAAAATTGATGGTGATTACTGAACAGGAATCAAATCTAAATGGTTCTAATTTAATGGAGAGAATTGACAGAGCATTGTACTTTTACAGTGCACTGTTTGACTGCTTGGACTCTACTGTTATGAGAACATCAGTAGAGAGACAAAAACTTGAGAGCATGCTTCTTGGGGAGCAAATAAAGAACATCATTGCTTGTGAGGGAGTTGATAGAAAGGAGAGGCATGAGAAACTTGAGAAATGGATTCGAAGGCTTGAAATGGCTGGCTTTATGAAGGTACCTTTGAGCTACAATGGTAGGATAGAAGCAAAGAATCTGTTGCAGAGATATGGTCATAAATACAAGTTTAGAGAAGAAAATGATTGTTTGCTTGTCTGTTGGAGTGATAGACCACTATTTTCTGTATCAGCCTGGAGTTTTAGGAGATGA 1302 0.3909 MRELRWDSQGLNPISLLIECAKCVASGSIKNADIGLEYISQISSPDGDAVQRMVTYFSKALGYRIVKHLPGVYKALNSSKTSLSSEDILIQKYFYELCPFLKFSYLITNQAIIEAMECEKVVHIIDLHCSEPAQWINLLLTLKDRPGGPPHLKITGIHEKKEVLDQMSFHLTTEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGEALAITSVLQLHFLLATDDEMVGRISPAAAASMNLQRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSLGASPKMGIFLNAMRKLQPKLMVITEQESNLNGSNLMERIDRALYFYSALFDCLDSTVMRTSVERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIRRLEMAGFMKVPLSYNGRIEAKNLLQRYGHKYKFREENDCLLVCWSDRPLFSVSAWSFRR. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07058 433 Pfam GRAS domain family 14 429 IPR005202 -
Seca3g07058 433 ProSiteProfiles GRAS family profile. 4 430 IPR005202 -
Seca3g07058 433 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 426 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07058 Seca-Chr3 167048682 167051721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07058 1 433 GRAS Transcription Factor Family AT1G50420 51.701 1.49e-156 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g07058 GRAS 1.1e-119 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07058 - - lja:Lj3g3v0821290.1 795.808