Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07042 ATGTTTGTTTTGCAGTTAGGTAAAGGATTATACTTCGAGGCTTCTTCGATTTCGCTCTGTTGCTCGCGGAGCTTTTTTCCTGTTTCGGTTAAGGAACCTGATCTCGGATCTTTTCCCCTTAAATCTGCTCGCGTCAATCTACTGTTGTTGATTCCATCAGAGGTTTTTTTTACTGATCCTGCTGGAAATACATTTCCAGTAGGACTTTCTTTGAAAGGTGATAGGGCTATGTTTAAACGAAATGTCGATACAATGACCAGATTTTATGGGCTGAGTCGAAAGCACAGTATGCTTTGTAAGTATAAGGGTGGTAACCAGTTTTATATATTGGTTGGTAATAGATATGGGGTTGAAATTAAGTATCCTGAAAGGAGGAACCCTGATGTAATTGTAGTATCTTCTGATGACTACGAAAGTGATCCTGAGGAGTACCCAGGATGGACTGTCACTTTGACAGGACCTGCTGCATCTGGGTCTAATCCATTGCTTATCCCTGCAAAATATGTCAGAAGAGTTCTTTCCAAAAATCAAAAGACTTTGACTATAAATGATGTAAATGGCGACAAAATAGGAGAATCTTCCAAAACAAAACCGCTGATCGATTATTTCCAAGCCAAGTTGGATCCATCTAAGGCTGTTATACCTATTGATAGGTGTTTTCTTCATTTGTGGGAAAATGTATTCAAAGAACGAGATTTTTACTTGAGAGATCCTGAGCAGAATTGTCATGTTGTGAGAACTATTAGGAATAGAAATGGTGATTATGAATTTTACTCGGGAGTGCAGTACATGGTTGAGTTTTATTGGTTGGAAGGAATCCATACCGTCCACTTGGCATATGCTGAGGTTGGAAAAAAAGTCCTTACATGGCCCGATCATGTTGAACAAGAAGAAATTGGGTGGACAGTGAAAGTTACAAAAGCAATTGCATCTGCAAATAACCCTTTGCCAATTCCTGCTAGAATTGTTCGAACAATTCTTAAAGAAAACCAACATATGGTGTATATTTTTGATGAGGAGGGAGAAGCTTTTATTGTTGATCTGATTCCTGGACGAAGGAGTTCAGAATGCTTCCTAGGAAAGGGATGGTATGAGTATGTTAAGCAGAAAAATCTGAAGGAGGGAGACAACGTGAAGTTAACATTCAGTTATAGCCATAGGGACATTGATTCCCATATAATTAAGGGTTGA 1191 0.3887 MFVLQLGKGLYFEASSISLCCSRSFFPVSVKEPDLGSFPLKSARVNLLLLIPSEVFFTDPAGNTFPVGLSLKGDRAMFKRNVDTMTRFYGLSRKHSMLCKYKGGNQFYILVGNRYGVEIKYPERRNPDVIVVSSDDYESDPEEYPGWTVTLTGPAASGSNPLLIPAKYVRRVLSKNQKTLTINDVNGDKIGESSKTKPLIDYFQAKLDPSKAVIPIDRCFLHLWENVFKERDFYLRDPEQNCHVVRTIRNRNGDYEFYSGVQYMVEFYWLEGIHTVHLAYAEVGKKVLTWPDHVEQEEIGWTVKVTKAIASANNPLPIPARIVRTILKENQHMVYIFDEEGEAFIVDLIPGRRSSECFLGKGWYEYVKQKNLKEGDNVKLTFSYSHRDIDSHIIKG. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07042 396 SUPERFAMILY DNA-binding pseudobarrel domain 301 382 IPR015300 -
Seca3g07042 396 Pfam B3 DNA binding domain 308 382 IPR003340 GO:0003677
Seca3g07042 396 SUPERFAMILY DNA-binding pseudobarrel domain 27 111 IPR015300 -
Seca3g07042 396 Gene3D - 298 395 IPR015300 -
Seca3g07042 396 ProSiteProfiles B3 DNA-binding domain profile. 301 396 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07042 Seca-Chr3 166728053 166733377 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g07042 B3 1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07042 - K09287 lja:Lj6g3v0497350.1 61.2326