Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07041 ATGACCATCATATTCCTGTTAACTGTTTTAAATTCCTTTCATTCGAACAAATTATTAATGGACATGATGACGGTTGCTTATTTGATGTTATTGGTCATGTTGTTGAGAAAGATGAAATTAAAGAAAATGACAGAGAAGGGAAAAAAAAGCAAACTGATTGACGTTGTTCTTGAGGATTTAGAGAAGAATCGTCTCATATGCACTCTTTGGGGACAATTTGCTGAAGAAATGAGTTCCTTCCTCAAGAAAGAGTCAGAAAACAATGACAGTATTGTTGTTATTTTACAGCTGGGGAAAAGAAAATTTTTTAATGGTCAAGTTGGGATTTCAAATTCATACAATGGCACCAAATTACATATCAATGCTGATGTGCCTGAAGTTGCTGCTTACAAAGAGAAACTTGGTAATGGTGACAATTCTGTTACTCAAGTAGTAAGTCAAATGTCATCACAACAATCTCTTTCAATTGGTGAGGATTTGCTGATTTCACGTAGATTGACCATTTCTGAAATAATTGATAGCATTCAGCCTACTATTGGCTCATTATTGGCTCCCATAATAGAGATAGATCTGGACAAGGATTGGTGGTTTCAATCATGTTCCAAATGTTTTAGAAATGTTGTCAAAATGGGGTCAAAGTATTATTGTCAACACTGTAAGAGTTCTGCATTGGTTCCAAGGTTTAAAGTGAGTGAAAATGTTATCGATGAAACTGGATCGACATGTTTGATTATGTTTGATGCTGTCCTATCTAAGTTTATAGGCAAAACAGCGTCTGATTTACTTCTGGAAAATGATAAGGCAAAAGGAAAGGGATATTGTCCCCGTGAGATTGATGCATTGGTTGATAAGGAGTTTTTGTTCAAAGTGGAAGTTTCTGATGCTAATATTGTCTACAACTTCAAGACATACAAAGTGAAATTCATGACCAATGAAAAAGATTTGATTGATCAATTTAAGATTATGCATTCGATTAAGGATCTTGATCAAGATGATGGGGAAAGTCCAGATCTTGAAAGAATTTCCCCACAAATTGAGGATAATATGAAGCATCACTGTGAAAAAGAACCTACAGGTTCTAAAGCTGATTTATCTCAACACATTGAGGACATTTCATGTGATGGTGACCTAGTCACACCATTGAGCAAGGTGGCTGGAAAAAGAAGTATTGAAACAGTGGATATAACAACTGACTTTGATGAGGGAGCAATTGAATCTTCAAGCACAAAAAACCCAAAAAATGTGAAGATCAAGATGGAGCCAAAAGATTAG 1272 0.353 MTIIFLLTVLNSFHSNKLLMDMMTVAYLMLLVMLLRKMKLKKMTEKGKKSKLIDVVLEDLEKNRLICTLWGQFAEEMSSFLKKESENNDSIVVILQLGKRKFFNGQVGISNSYNGTKLHINADVPEVAAYKEKLGNGDNSVTQVVSQMSSQQSLSIGEDLLISRRLTISEIIDSIQPTIGSLLAPIIEIDLDKDWWFQSCSKCFRNVVKMGSKYYCQHCKSSALVPRFKVSENVIDETGSTCLIMFDAVLSKFIGKTASDLLLENDKAKGKGYCPREIDALVDKEFLFKVEVSDANIVYNFKTYKVKFMTNEKDLIDQFKIMHSIKDLDQDDGESPDLERISPQIEDNMKHHCEKEPTGSKADLSQHIEDISCDGDLVTPLSKVAGKRSIETVDITTDFDEGAIESSSTKNPKNVKIKMEPKD. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07041 423 CDD RPA1_DBD_C 168 330 IPR047192 -
Seca3g07041 423 SUPERFAMILY Nucleic acid-binding proteins 33 136 IPR012340 -
Seca3g07041 423 PANTHER OS03G0429900 PROTEIN 47 345 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g07041 423 SUPERFAMILY Nucleic acid-binding proteins 164 302 IPR012340 -
Seca3g07041 423 CDD RPA1_DBD_B_like 40 131 - -
Seca3g07041 423 Pfam Replication factor-A C terminal domain 186 295 IPR013955 -
Seca3g07041 423 Gene3D - 148 323 IPR012340 -
Seca3g07041 423 Gene3D - 15 144 IPR012340 -
Seca3g07041 423 MobiDBLite consensus disorder prediction 401 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07041 Seca-Chr3 166722897 166725547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07041 10 261 Core DNA Replication Machinery Family AT5G08020 27.547 2.40e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07041 - - mtr:112422829 238.81