Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07037 ATGGCCAAGAACAGCTGGTTTAGTATGGTGATGAGGCTCTTTACATGGGACACACATGCCACACAAGAGAAGTATGATTGTGTTGCTTATGAGACAAAAACTTGTTTTCAGAAGGAGAAAAGAAGGAAGTGGATATTTGGAAGGCTAAGGACTAAGAGATTGCCTTCAATTGAAGCTCCACCACCATCAAAAGAAACAATATTAAGTGAAGCTGAGGAAGAACAAACTATTGCCTCAGCTGCTGCTGCTGAAGCTGCTATTACTGCTGCTCAGGTTGCTGTTCAGGTTGTTAGGCTCCAATCTGCTCATCATTGTACAGAAAACTCAGAAGTCCAACCTGTTAAATCTAGGCATGATGCTCCTCAATCAACATACCAATGGCAGAGGAAGATTGAAGAATCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTAGCAAGAAAAGCTTTGAGGGCATTGAAGGGAATAGTGAAACTTCAAGCTATCATTCGTGGCAGAGCTGTAAGACGCCAAGCTATAAGTACTCTGAAAAGCTTGCAATCCATTGTAAATATCCAGTCACAGGTGTTTGCAAGGAGGCTCCAAATGGTTGAAGGAAGATGTGATTGTGGTGAAAATGAAGATATGCAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGGATGATAGCATTTTATCGAAGAAAGAGGTAGATGCCTCTTGCCTAAGCAAGAAAGAAGCTGTTGTTAAAAGAGAAAGAGTAAAAGAATACTCATATAACCATAGAAGGTCAGCTGAATCAGAAAGAAATAAAATAAATGGAAGGTGGAGATATTGGATGGAGCAGTGGGTAGATACCCAACTTTCTAAGAGCAAAGAACTTGAAGATTTGGACTCAGTTTTCAGCTCACATTCTAGAGGTGGGGATGAATGTGGAAGAAGGCAACTTAAGCTTAGACATATTCCAAGACAAAATCAGATTGAAGGATTAGATTCTCCAATACTTGCTTCAAGGAACTCATTTCCCCACAGGAGCCAGAATTCAGAGGGAGATGATCATTCAATTCCAAGCTCTCCTGCAATTCCCACATACATGGCTGCAACAAAATCAGCACAAGCAAAAGTAAGATCAGCAAGCTCCCCAAGAGTTAGGACAGGAGGGAATTTGGACATGAACTCTGATTCCTATTCGCCATGCAAGAGAAAGCTATCTATCATAGCTTCCATTAATAATGAAGTTGTTAGTAATGGTACTAGGATGGGGAAGCTCAGTAATAATCAGCAAAGATCTCCTAGCTTTAAAGGCCTCTCAAAGCCTTTAAAATCAAACCAGACAATGAGGGATCTCATCATTAATTCGGATTTCTCAGTGCCGAATTGA 1386 0.4062 MAKNSWFSMVMRLFTWDTHATQEKYDCVAYETKTCFQKEKRRKWIFGRLRTKRLPSIEAPPPSKETILSEAEEEQTIASAAAAEAAITAAQVAVQVVRLQSAHHCTENSEVQPVKSRHDAPQSTYQWQRKIEESSAIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAISTLKSLQSIVNIQSQVFARRLQMVEGRCDCGENEDMQGSRDKIIRMDSNSERRWDDSILSKKEVDASCLSKKEAVVKRERVKEYSYNHRRSAESERNKINGRWRYWMEQWVDTQLSKSKELEDLDSVFSSHSRGGDECGRRQLKLRHIPRQNQIEGLDSPILASRNSFPHRSQNSEGDDHSIPSSPAIPTYMAATKSAQAKVRSASSPRVRTGGNLDMNSDSYSPCKRKLSIIASINNEVVSNGTRMGKLSNNQQRSPSFKGLSKPLKSNQTMRDLIINSDFSVPN. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07037 461 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Seca3g07037 461 ProSiteProfiles IQ motif profile. 132 160 IPR000048 GO:0005515
Seca3g07037 461 ProSiteProfiles IQ motif profile. 156 183 IPR000048 GO:0005515
Seca3g07037 461 SMART iq_5 131 153 IPR000048 GO:0005515
Seca3g07037 461 Pfam IQ calmodulin-binding motif 134 153 IPR000048 GO:0005515
Seca3g07037 461 MobiDBLite consensus disorder prediction 332 346 - -
Seca3g07037 461 MobiDBLite consensus disorder prediction 419 443 - -
Seca3g07037 461 Pfam Protein of unknown function (DUF4005) 348 430 IPR025064 -
Seca3g07037 461 MobiDBLite consensus disorder prediction 324 397 - -
Seca3g07037 461 Gene3D - 132 183 - -
Seca3g07037 461 MobiDBLite consensus disorder prediction 363 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07037 Seca-Chr3 166603212 166606165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07037 37 461 IQD Protein Family AT5G13460 45.558 6.89e-98 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07037 - - gmx:100794802 612.838