Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07036 ATGTTGCGTACTTATGGCTCTTGGTCCATGCTTATTTTCATGTGTTCAAAATGGATGTGTACCTATAGATCTTGCCAATTTAGTTCATATAAGATGGATGAGTTTGGGGATGGTTCATTTATTAACCTAGATGACATTAGTGATATTAATCATGATTATGGTGAGGACTTTGATATGAATGGTCAGGAAGGTCAGAATGATTTGGGTGGTCCTAGTGTTTGTGCAGGGTTAGGTGAAACAGACCATGGGGATAAAAGAATAGAAGATATGAGTGGTGATGACATCCGATGCATGGAGTTTGCTAGTGAAGAGGATGGTTGTCTCTTTTACCAAACATATGCAAAGTGTCATGGTTTTGTTGTTAGGAAAGATGAGGTGGATAGGAAAAAAGAGCATAGGCCAATAACTCGTGTGAGGTGTGAAGCTAAGCTGAGAATCCGCTTAAATTATAAGACATGTAAATGGAAGGTAGTATCTTTTGTTGAGACTCATAATCATGAGCTTCCCCCTTACAGTTATGTGCATTTATATCCTGCTTATAGAGGCCTAACTGATGCTGATAAAGCTCAAGTAGATAGGTTGCATGCATATGGTGTTAGAACATGCCACATAATGGGATACATGTTAGATCAAAAGGGGGGATATGCTTCCCTTGGGTTTTGTAGAAAGGATTTGTATAATTATATTGAACGTCATAAACTTGAAAAGATTAAAGATGGGGATGCACATGCAGCCTTAGGTTATATACAAGCAAAGGCCAACAATGATCCCACACTTCGTTGTAGTTTCCTTGCTACGGATGATGGTTGTTTGAGAAATTTATTTTGGGCAGATGGGGGAAGTAGGGCTGATTATTATTGCTTTGGGGATGTTCTTGCATTTGACACAACTTATAGGAAAAATCGATATAACAAACCTTTGGTTATATTTTCTGGTTGTAACCATCATGGTCAGACAGTTGTTTTTGGTTGTGGATTGGTTGCTGATGAGACTATTGAAACTTATAAGTGGTTGTTAGAAGAATTTCTTCGTGCTATGTCATATAAACATCCTGCTGCAGTAGTTACGGATGGAGATAGTAATATGAGAGAGGCTATCAAGCAGGTAGCCATGTATTCTAATTTCACTGAGGAAAAATTTGAAGTGTATTGGAAGCGAATGGTTGCAAAACATGGTCTTGTAGGAAACAAGTGGGTGACTAAAACCTATGAAAATAGGTCAATGTGGGCTAGTGCATATTTTCGTGATAAATTCTTTGGTCGGATTAGAACAACATCACAATGTGAGGCAATAAATTCCTTGGTGAAGGTGTATGTTAATAAGAAAGAAACTATTCTTGAATTCATTAATAGGTTTGAGCAAGTTTTGAGAGAGTATAGGAACAATGAGCTGATTGCAGAATTGAAGTCTATGTTTACTCAACCAGTTTTAACTACCTCTCTTCAGAAAATTGAGAGTGAGGCAGCAAAAATATTCACATTGGAGATTTTTAGGGAAGTTAAATCTGAGATTGAGATTGCTTGTTCCTTAAATTTAATTGCAAGAGAGGAAATTGGAGAGAAGCTGATTTTTAAGATGAACCCTTATGGCAAACCTGGTCATGATGTTCAGGTGGTGTATGATGTTGTCAATTCTCAATTTCTATGTGATTGTAGATTTTTTGAGAGTCGTGGAATACCTTGTTCTCATGTAATATGTGCGATGAAAAATGAAAACATGCAATCCATTCCAAGAAGCTTGATTTTGAATCGTTGGACAAAGAAGTGCAAGAGTGATCTTATTTCCTCATATCAATCAGAGGATATGGATACTGACGTTATGAAAACTGCCCGTTTAGGGGCTGTTGGTGGAGTTTTCCAAAGGTTGGGATGTATTGCTATAGAAAAGAAAGAATACTTCAATAATATAATGGAACATTTTTTGAAGGTGGCGAATAAATATGAGATGATTGGGGAAACACGTGCCACACAAACCAACCGTGAAAAGATTGTCAAAGATCCACCGGTTGTGAAAACAAAAGGAGCACCACAAAAAAAGTATGGGAGAAAAAGGAGAAGATTCTCAAAGTGCAATAGAATCGGTCATATTATTAAGAGTTGTCCTGAGCTTGTTGGCAAGGAACATGAAGAACATAATATGCATAATTCAGCTTCAGAAGACAATGAGGAAAGGGGAAGCACACCAGTAGATGATGACAATGGTGGTGACATGGAGTTTAGTAACAAAAATGAAAGATTTAAGGATAATCAAGAAAATGTGAAACTCAATTGTAGTGTTAAAGGGAAGGAAAAGGAAAAGGATGCGGATAATGCGAATGTTCTTGGTGTATCTTCTTGGAATGGCTTGCTTCAACAAGTTATGAATAATGGAATAGGATTTGGCGGCAAACCCACTAAGCATGTGAAGTCTATGAATGGAGAGCATTGTGGAGTGAATGAGACACTGTCATTTTGGCTAGTCAAGCAAACTCTAGTCTTTGCTTAG 2484 0.3748 MLRTYGSWSMLIFMCSKWMCTYRSCQFSSYKMDEFGDGSFINLDDISDINHDYGEDFDMNGQEGQNDLGGPSVCAGLGETDHGDKRIEDMSGDDIRCMEFASEEDGCLFYQTYAKCHGFVVRKDEVDRKKEHRPITRVRCEAKLRIRLNYKTCKWKVVSFVETHNHELPPYSYVHLYPAYRGLTDADKAQVDRLHAYGVRTCHIMGYMLDQKGGYASLGFCRKDLYNYIERHKLEKIKDGDAHAALGYIQAKANNDPTLRCSFLATDDGCLRNLFWADGGSRADYYCFGDVLAFDTTYRKNRYNKPLVIFSGCNHHGQTVVFGCGLVADETIETYKWLLEEFLRAMSYKHPAAVVTDGDSNMREAIKQVAMYSNFTEEKFEVYWKRMVAKHGLVGNKWVTKTYENRSMWASAYFRDKFFGRIRTTSQCEAINSLVKVYVNKKETILEFINRFEQVLREYRNNELIAELKSMFTQPVLTTSLQKIESEAAKIFTLEIFREVKSEIEIACSLNLIAREEIGEKLIFKMNPYGKPGHDVQVVYDVVNSQFLCDCRFFESRGIPCSHVICAMKNENMQSIPRSLILNRWTKKCKSDLISSYQSEDMDTDVMKTARLGAVGGVFQRLGCIAIEKKEYFNNIMEHFLKVANKYEMIGETRATQTNREKIVKDPPVVKTKGAPQKKYGRKRRRFSKCNRIGHIIKSCPELVGKEHEEHNMHNSASEDNEERGSTPVDDDNGGDMEFSNKNERFKDNQENVKLNCSVKGKEKEKDADNANVLGVSSWNGLLQQVMNNGIGFGGKPTKHVKSMNGEHCGVNETLSFWLVKQTLVFA. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07036 827 Pfam FAR1 DNA-binding domain 127 168 IPR004330 -
Seca3g07036 827 MobiDBLite consensus disorder prediction 704 747 - -
Seca3g07036 827 Pfam MULE transposase domain 291 369 IPR018289 -
Seca3g07036 827 SMART 26again6 547 574 IPR006564 GO:0008270
Seca3g07036 827 ProSiteProfiles Zinc finger SWIM-type profile. 534 572 IPR007527 GO:0008270
Seca3g07036 827 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 92 620 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07036 Seca-Chr3 166555050 166558898 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g07036 MULE 9.8e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07036 - - ccaj:109792835 753.051