Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07032 ATGACAAGCTCTCTCATTAAGGAATTATATCCTACAAAAGAAGACTGGAGACTTAAGGTAAAGGTAAGCAGATTGTGGGATGTTCCAAGACGTGATTCTAAAGGGGTTGCGGCTGTCAACATGATACTCGTTGATGAGGAGGGCAATAAGATTCAAGCAAGCATATTTCAGCCAGAGCTAATATCTAAATTTGCATCTTGCATCAATGAGGGGAATTGTTATAACATTGAAAATTTGAGCATTGGAGAAAATTCTGGAAATTATAAATCAACTAAACATCCATACCGCATCACTTTTGGATTTGAAACAAAGGTTACACCATGTGAAGCTGTCATCCCTGATTATGCATTTGACTTTGCTCCTTTTGATAAAATTCTATTAGAGAAAAATCCTATGGGACATTTAATTGATATCATTGGAGCAATAGCTGAAATTAGTCAACTACAACAATTCAACTTTGAGGGAGAAAGTGGCAAAAGACTAGAGATTAAATTGGCTGATGAAAGAGATAACTTTGTTAGATGCACACTATTTGGAGACTCTGCTGTAGATGTTTTTAATTCTGTATCCGGTGGTAGTGATGACACAAAGATCATGGTTATACAACTAGCACGAATTAAACCTTTCAAAGGACAAAACTACTTGGCTACATCATGGAATACAACGAAAATATTCATCAATCCAAATATTCTAGAAGTAGAAAAGTTTAAGAATATGTTAGGGGTATCCCTGCCAAATTTGACTCCAACACAATCCAACACTCAGTTATCAAGTGGGTCTTCATCTTACATAGATGAACTTGGAAACCCTGCTCTCAGACGAACATTAATAGAAATTCGAGATGCAAAACAGTCTGGAAGAGTAACTACCCTGGCAACTATTCACAAAATAGTTAAAATTGAGAATTTGTTCTACAAGTCATGTAACATCTGTTGGAAGACAGTACTAGACAAGGATGGTTTCTTATTATGTACCAAATGTCACAAGACTCCATCTAAAGTTATCCCAAGATTCCGGACGCATTTAATGGTGATGGATCAAACTGGAAGTGCTTGCTTTGTCCTCTTTGAGAAACAAGGTGTTGAACTATTCAACAAGACAGCAAATGAACTACGTGAAGAGATGGTCAAGGATGGTAATGACTCTGCATTCCCACCTATTTTGGAAACATTAGTGGGAAGAAAGTTTGTTTTCATGATTGAAATCAATGCACACTTTAACCTGGAGAAGAAGTCAAATAACTACACAATCTTAAAGCTTTCAGATGACACTCGTGTAATACAAGAATTTGATACCTCTTCAGTTGTTTCACAGGAATACCAAGGTCCTGCAATCTCATCCACTCAAGAACAAGACAACTTTCAGAGCAGTGTACACAATGAAATTGGACAGGCTTCACTTACAGCAGAAAATGACACTGACATCTACTCAAAGACTATGATCACACCTCACAAAAGAAAGAAAAAAAGCAACAGCTCAGATTGTGAAATTACTGGAGTCAATCAGGTGCTAAGTCCAAAGCTTTCGACAACAAAGGCATTTGTTCGAGTTAAAATTGAGAAGAAAAAATGTAAACGATACAATGTAGAATAA 1593 0.3653 MTSSLIKELYPTKEDWRLKVKVSRLWDVPRRDSKGVAAVNMILVDEEGNKIQASIFQPELISKFASCINEGNCYNIENLSIGENSGNYKSTKHPYRITFGFETKVTPCEAVIPDYAFDFAPFDKILLEKNPMGHLIDIIGAIAEISQLQQFNFEGESGKRLEIKLADERDNFVRCTLFGDSAVDVFNSVSGGSDDTKIMVIQLARIKPFKGQNYLATSWNTTKIFINPNILEVEKFKNMLGVSLPNLTPTQSNTQLSSGSSSYIDELGNPALRRTLIEIRDAKQSGRVTTLATIHKIVKIENLFYKSCNICWKTVLDKDGFLLCTKCHKTPSKVIPRFRTHLMVMDQTGSACFVLFEKQGVELFNKTANELREEMVKDGNDSAFPPILETLVGRKFVFMIEINAHFNLEKKSNNYTILKLSDDTRVIQEFDTSSVVSQEYQGPAISSTQEQDNFQSSVHNEIGQASLTAENDTDIYSKTMITPHKRKKKSNSSDCEITGVNQVLSPKLSTTKAFVRVKIEKKKCKRYNVE. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07032 530 Gene3D - 4 110 IPR012340 -
Seca3g07032 530 Gene3D - 111 243 IPR012340 -
Seca3g07032 530 FunFam Replication protein A subunit 3 110 - -
Seca3g07032 530 PANTHER OS03G0429900 PROTEIN 1 494 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g07032 530 Pfam Replication factor-A C terminal domain 290 421 IPR013955 -
Seca3g07032 530 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Seca3g07032 530 Pfam Replication protein A OB domain 128 216 IPR031657 -
Seca3g07032 530 CDD RPA1_DBD_B_like 137 240 - -
Seca3g07032 530 Gene3D - 258 430 IPR012340 -
Seca3g07032 530 SUPERFAMILY Nucleic acid-binding proteins 275 421 IPR012340 -
Seca3g07032 530 SUPERFAMILY Nucleic acid-binding proteins 117 248 IPR012340 -
Seca3g07032 530 CDD RPA1_DBD_A_like 17 105 - -
Seca3g07032 530 Pfam Domain of unknown function DUF223 41 127 IPR003871 -
Seca3g07032 530 CDD RPA1_DBD_C 287 398 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07032 Seca-Chr3 166406261 166409762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07032 6 427 Core DNA Replication Machinery Family AT4G19130 24.062 9.15e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07032 - - soe:130460986 241.506