Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07027 ATGCCGCCCCCTACTCAACGTCCAACAGAAACTGATCCATCTACACAAGAGGTATGTGCCAAGAGGAAATCTAGTAGGCCTGCTTCTAGTTGTTGGACTCATTTTAAAAGGGAAGGGGATAAGGTTGTATGTAACTATTGTGGCAAAACCTATGCATGCAATAGTTCTAACCATGGGACAACAAACTTGAACAAACATTTGAAAGTCTGTGCTAAGAACCCAACTAGGGAAATTGATAAGAAACAAAAGACTCTTCATCTTGGAAAATAG 270 0.4037 MPPPTQRPTETDPSTQEVCAKRKSSRPASSCWTHFKREGDKVVCNYCGKTYACNSSNHGTTNLNKHLKVCAKNPTREIDKKQKTLHLGK. 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07027 89 PANTHER OS03G0264950 PROTEIN-RELATED 12 81 - -
Seca3g07027 89 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g07027 89 SMART bed5 26 73 - -
Seca3g07027 89 SUPERFAMILY beta-beta-alpha zinc fingers 29 77 IPR036236 -
Seca3g07027 89 ProSiteProfiles Zinc finger BED-type profile. 26 77 IPR003656 GO:0003677
Seca3g07027 89 Pfam BED zinc finger 30 68 IPR003656 GO:0003677
Seca3g07027 89 MobiDBLite consensus disorder prediction 10 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07027 Seca-Chr3 166023166 166023435 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g07027 zf-BED 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07027 - - lja:Lj3g3v1309430.1 93.5893