Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07013 ATGGGTCGTGGGAAGATTGAGATCAAGAGAATTGAGAATGCCAACAACAGGCAAGTCACCTTCTCCAAGAGAAGAAATGGCTTGCTCAAGAAGGCTAATGAGCTTTCCATTCTCTGTGATGCTGAAGTTGCTGTCATCGTCTTCTCCAACACCGGAAAGCTCTTCGAGTTTTCCAGTTCTGGTATGAAGCAAACAATTTCAAGATACAACAAATGCCTTGGTTCTACAGATGCTGCTGCAGTGGAATATGAGGCACAGATTTTTCTTCAGAAGGAAGATTCTCATATGGTGGAGATTCTAAGAGATGAATATGCAAAGTTAGAAACCAAACAATTACAGTTGTTGGGTAAGGACCTGACAGGATTGGGCTTAAAGGAATTGCAAAATTTAGAGCAGCAACTTAATGCAGGGTTATTGTCTGTCAAGGAGAGAAAGGAGGAATTACTCATGGAACAACTGGAGCAGTCTAGATTGCAGGAACAAAGGGCTATGTTGGAGAATGAAACTTTGCGCAGACAGGTTGAGGAGCTTCGTTGTCTGTTTTCACTGTCCGATCATGTGACCCCATCATATCTTCAATATCACCGCCATATGGAAAAAAATAATACTTTTGTAAGCACCAGTGCCATATGTCCCAACATGGCCAGTAACCTCAGAAATGGGAAAGCAAGTTCAAACACAACATTGAGGTTGCTTACTGATGTTCATGACAAGAGGGAGGAACCTGAGAAAGAAACCTTTTCAAACGGCTCTAATCTGAACTAA 765 0.4196 MGRGKIEIKRIENANNRQVTFSKRRNGLLKKANELSILCDAEVAVIVFSNTGKLFEFSSSGMKQTISRYNKCLGSTDAAAVEYEAQIFLQKEDSHMVEILRDEYAKLETKQLQLLGKDLTGLGLKELQNLEQQLNAGLLSVKERKEELLMEQLEQSRLQEQRAMLENETLRRQVEELRCLFSLSDHVTPSYLQYHRHMEKNNTFVSTSAICPNMASNLRNGKASSNTTLRLLTDVHDKREEPEKETFSNGSNLN. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07013 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca3g07013 254 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca3g07013 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Seca3g07013 254 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Seca3g07013 254 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Seca3g07013 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 MobiDBLite consensus disorder prediction 234 254 - -
Seca3g07013 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g07013 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Seca3g07013 254 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca3g07013 254 Coils Coil 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07013 Seca-Chr3 165496967 165502167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07013 1 251 MADS-box Gene Family AT5G13790 53.968 8.78e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca3g07013 K-box 4.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07013 - - gmx:547732 292.352