Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g07001 ATGGGCAAAGCAAGTTGTTGGGCTTTTCTATCCTTTCTCATTGTCACCATCTTTGTGGATGAAATTCATGGAAGCAAACAAGTTAGAGCCCTTGACAAGTTTCATAAGTCCAAGTCACAAATTGATAGGAGCCAATTTGTGGCACAAGAGCTTATTGTGCATGATGCTGCCATGGTTCATTCTCAGGATGGTTTGAAAGAGAAAGATAGGATTGAGAAGCTTCCAGGGCAGCCCCAGGTGAAATTCTCTCAGTATGGAGGGTATGTCACAGTGGATAAATTGGCAGGGCGTGCCTTTTACTATTACTTTGTGGAAGCTCAACGTTCTAAAGAAACACTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTTGCGTATGGAGCAATGCAAGAAATTGGACCCTTCCGTGTAAACAGTGATGGGAAAACACTTTACAAAAATAGATATTCATGGAACTACGCTGCAAATATTTTGTTCCTGGAATCACCTGCTGGGGTAGGATTTTCTTACTCAAACAAATCATCTGATTATGACACAAATGGGGATAGAAAAACAGCTGCAGATAACTATGTGTTCTTAGTGAATTGGTTGGAAAGGTTCCCTGAATATAAGAATAGAGATTTCTATATTGCTGGGGAGAGCTATGCTGGGCATTATGTCCCTCAACTTGCACACAATATTCTCTTCCATAACAAAAAGGCAAACAAGACAATCGTCAACCTCAAAGGAATAATGATTGGGAATGCAGTGATCAATGATGAAACAGATACAAGAGGAATGTATGATTTTCTTGCCAGCCATGCAATCATATCAGACCAAGCAGCACATGATATCAACAAATTTTGTGATTTCTCATCAAGTGCTTCTAACCAGACTAGTGAGTGCAATGCAGCAGTTGATGAAATCGGGAAGGATATTGCCTTCATTGATGTCTACAACATCTATGCTCCACTCTGCAATAATCCCAACCTCACTACCCAACCCAAGAAGAACTCTGTGAGATCCAAATTCCAACCCCTTTTCTTTTTGTTGCTATCCTTAAATCGCTCAAAGCAGATTGTTATTGATCCCTGTAGTGATAACTATGTATATGCATATCTTAACCGAGGTGATGTTCAAGAGGCCATCCATGCCAATGTCACCAAGCTCAAATATGACTGGGAGCCTTGTAGTGATATCATTTCAAAGTGGGAAGATAGTCCTTCAACAGTCATTCCTCTTTTACATGAATTCCTCAATAGTGGACTCAGGGTCTGGATTTTTAGTGGTGATATAGATGGAAGGGTGCCTGTTACTTCAACCAAGTATTCCATTAACAAGATGAAGCTTCCCATTCAAACTACCTGGCATCCATGGTTCATATATGGAGAGGTTGGAGGCTATACTCAAGTATACAAGGGAGGTCTAACTTTTGCCACAGTGAGAGAAGCAGGGCATCAAGTGCCAAGCTACCAGCCAGCAAGAGCCCTTTCTCTAATCAAACATTTCTTAGATGGCACTCCTCTTCCTAATACTAAAAGATATGACTAA 1542 0.4099 MGKASCWAFLSFLIVTIFVDEIHGSKQVRALDKFHKSKSQIDRSQFVAQELIVHDAAMVHSQDGLKEKDRIEKLPGQPQVKFSQYGGYVTVDKLAGRAFYYYFVEAQRSKETLPLLLWLNGGPGCSSLAYGAMQEIGPFRVNSDGKTLYKNRYSWNYAANILFLESPAGVGFSYSNKSSDYDTNGDRKTAADNYVFLVNWLERFPEYKNRDFYIAGESYAGHYVPQLAHNILFHNKKANKTIVNLKGIMIGNAVINDETDTRGMYDFLASHAIISDQAAHDINKFCDFSSSASNQTSECNAAVDEIGKDIAFIDVYNIYAPLCNNPNLTTQPKKNSVRSKFQPLFFLLLSLNRSKQIVIDPCSDNYVYAYLNRGDVQEAIHANVTKLKYDWEPCSDIISKWEDSPSTVIPLLHEFLNSGLRVWIFSGDIDGRVPVTSTKYSINKMKLPIQTTWHPWFIYGEVGGYTQVYKGGLTFATVREAGHQVPSYQPARALSLIKHFLDGTPLPNTKRYD. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g07001 513 Pfam Serine carboxypeptidase 75 503 IPR001563 GO:0004185|GO:0006508
Seca3g07001 513 SUPERFAMILY alpha/beta-Hydrolases 72 507 IPR029058 -
Seca3g07001 513 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 163 IPR001563 GO:0004185|GO:0006508
Seca3g07001 513 PRINTS Carboxypeptidase C serine protease (S10) family signature 473 486 IPR001563 GO:0004185|GO:0006508
Seca3g07001 513 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 174 IPR001563 GO:0004185|GO:0006508
Seca3g07001 513 PRINTS Carboxypeptidase C serine protease (S10) family signature 200 225 IPR001563 GO:0004185|GO:0006508
Seca3g07001 513 FunFam Carboxypeptidase 408 503 - -
Seca3g07001 513 Gene3D - 362 398 - -
Seca3g07001 513 Gene3D alpha/beta hydrolase 65 325 IPR029058 -
Seca3g07001 513 ProSitePatterns Serine carboxypeptidases, serine active site. 214 221 IPR018202 GO:0004185
Seca3g07001 513 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 70 490 IPR001563 GO:0004185|GO:0006508
Seca3g07001 513 FunFam Carboxypeptidase 65 325 - -
Seca3g07001 513 Gene3D - 408 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g07001 Seca-Chr3 165183211 165191140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g07001 370 506 Calmodulin-binding Proteins AT2G22960 30.657 5.54e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g07001 K16297 - gmx:100783864 762.296