Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06997 ATGAATGCTTCTCATTATGAGACTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTTAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAATACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGTTATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTATACTATATACTTGGTACAAGCAATTCTGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATACGTGGTCGTGAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAATTCCAAACCCCACTGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATTAAAAAATGGCATCTATACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAGAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAAAGAAAGCATTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAACGTTGATGAAAGTAGAGACAAAACTGAGAGTATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAATGGAAATGATGAAAATCCAGAGAAAGCAAAAAATTTACTTGAGACACGTGCTAGAAATTTCTTCCTAGATGACATTGCTAAAAAAATTGGCTCTAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGGCAAGCTTCTTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGTTGTGCAAAATGAGCTTTTGCAGAAAATACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATACGTTGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAATGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCATGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTAA 1527 0.3792 MNASHYETLSIENDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEAKSERRGGCVLSHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTILYTWYKQFCKWEIPIPVYLIRGRENLRDFDETPLTIPGIPNPTDDVKHVLDCLEKIKKWHLYPSVLVMGYTSFLSLTRENSEYEHKKYMAKALKESIGILILDEGHNPRSTRSRLRKTLMKVETKLRVLLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKNGNDENPEKAKNLLETRARNFFLDDIAKKIGSSDDEVRMQGLNMLRKITSGFIDVYESGNSGKLLGLQIYTLLMNLTVVQNELLQKIQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNTLVGSKVRFILNLIIRVVKKEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFQDPCISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKG. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06997 508 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 508 IPR044567 GO:0080188
Seca3g06997 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 508 IPR027417 -
Seca3g06997 508 Gene3D - 3 293 IPR038718 -
Seca3g06997 508 SMART helicmild6 421 494 IPR001650 -
Seca3g06997 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 259 IPR027417 -
Seca3g06997 508 Pfam SNF2-related domain 36 280 IPR000330 GO:0005524|GO:0140658
Seca3g06997 508 SMART ultradead3 23 263 IPR014001 -
Seca3g06997 508 CDD SF2_C_SNF 388 505 - -
Seca3g06997 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca3g06997 508 Pfam Helicase conserved C-terminal domain 393 493 IPR001650 -
Seca3g06997 508 Gene3D - 333 508 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06997 Seca-Chr3 165038284 165039909 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g06997 SNF2_N 9.7e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06997 K10875 - gmx:100811703 692.96