Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06996 ATGAATGCTTCTCATTATGAGACTTTATCTATAGGAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAACACAACCAACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCTGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGTGGTCGTGAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAATTCCAAACCCCACTGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATTAAAAAATGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTACCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAAAACTGAGAGTATTACTTTCAGGCACATTATTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTGAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGCTAAAAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAACCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAAAATGAGCTTTTGCTGAAAATACAAAAGAAAATGGCTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCATGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGTTCAGTGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAGGATTTTGCGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTGAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAACCTTCAACAAACTGA 1725 0.3896 MNASHYETLSIGNDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSTQPTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFCKWEIPIPVYLIRGRENLRDFDETPLTIPGIPNPTDDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLPLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKELMKVETKLRVLLSGTLFQNNFGEYFNTLCLARPKFVEEVLKELDTKQKKGNDENPEKAKHLLETRARNFFLDDIAKKIGSSDDEVRMQGLNMLRKTTSGFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLLKIQKKMAGSSVFPLEGELMVTLGSIHPWLIKTATSSNFRVGSKVRFILNLIIRVVKKEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGEQDLFERGKVIDKFQDPCISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSVEEDKYRRTTWKEWVSNMIFSEDFAENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKPSTN. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06996 574 Gene3D - 330 573 IPR027417 -
Seca3g06996 574 Gene3D - 5 292 IPR038718 -
Seca3g06996 574 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 572 IPR044567 GO:0080188
Seca3g06996 574 SMART helicmild6 421 494 IPR001650 -
Seca3g06996 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 253 IPR027417 -
Seca3g06996 574 Pfam SNF2-related domain 37 346 IPR000330 GO:0005524|GO:0140658
Seca3g06996 574 CDD SF2_C_SNF 390 505 - -
Seca3g06996 574 Pfam Helicase conserved C-terminal domain 393 493 IPR001650 -
Seca3g06996 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca3g06996 574 SMART ultradead3 23 256 IPR014001 -
Seca3g06996 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 555 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06996 Seca-Chr3 165005636 165007459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06996 379 512 RAD5 or RAD16-like Gene Family AT5G43530 30.000 5.69e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g06996 SNF2_N 3.7e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06996 K10875 - gmx:100811703 823.542