Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06994 ATGAATGCTTCTTATTATGAGACTTTATCTATAGGAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCGGGTTCAATACAACCAACACTTATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCATATAAAAAGCCTCTGATCCTTACTCCAAAAACTACACTATATACTTGGTACAAGGAATTCTGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGTGGTCGTGAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAATTCCAAACCCCACTGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATTAAAAAATGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAACCCTAAAAGCACCAGGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAGTATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGCTAAAAAAATTGGCTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTGTAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGAAAAATGAGCTTTTGCAGAAAATACAAAAGAAAATGGTTGGGTCAAGTGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCGTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCATTCGTGTTGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGTACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTCAGGATCCATGTATTAGTCTTACTTCAGCTTCTCGGTTGATATTTTTGGACTCAGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCCATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAGGATTTTGCGGAGAACCCTTCACAGTGGCAAGCAGAGAAGATTGAAGATGATATACTGAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAACCTTCAACAAACTGA 1725 0.3849 MNASYYETLSIGNDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEEKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPYKKPLILTPKTTLYTWYKEFCKWEIPIPVYLIRGRENLRDFDETPLTIPGIPNPTDDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPKSTRSRLRKELMKVETELRVLLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDENPEKAKHLLETRARNFFLDDIAKKIGSSDDEVRMQGLNMLRKITSGFVDVYESGNSDKLPGLQIYTLLMNLTDVKNELLQKIQKKMVGSSVFPLEGELMVTVGSIHPWLIKTATSSNFRVGSKVRFILNLIIRVVKKEKVLIFCRNLAPMKLLVQLFEECFKWKKGGEILLLYGVQDLFERGKVIDKFQDPCISLTSASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFAENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKPSTN. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06994 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca3g06994 574 SMART ultradead3 23 263 IPR014001 -
Seca3g06994 574 Gene3D - 330 573 IPR027417 -
Seca3g06994 574 Pfam SNF2-related domain 36 350 IPR000330 GO:0005524|GO:0140658
Seca3g06994 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 253 IPR027417 -
Seca3g06994 574 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 10 572 IPR044567 GO:0080188
Seca3g06994 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 534 IPR027417 -
Seca3g06994 574 Gene3D - 7 292 IPR038718 -
Seca3g06994 574 CDD SF2_C_SNF 390 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06994 Seca-Chr3 164898685 164900508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06994 436 529 RAD5 or RAD16-like Gene Family AT5G05130 30.631 1.76e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g06994 SNF2_N 3.8e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06994 K10875 - gmx:100811703 815.453