Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06993 ATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCTTTCTTGTTAGTGTATCTGATTCGTGGTCGTGAAAACCTGAGAGATTTTGATGAAACAACATTGACTATTCTTGGAGTTCCAAACCCCACCGATGATGTCAAGCATGTTTTAGATTGCCTTGAAAAGATTAAAAAATGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGCTGAGGAAAGAGTTGATGAAAGTAGAAACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTAAATACTTCAACACAGTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATGAAAATCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAATTTCTTCCTAGATGACATTGCTAACAAAATTGGCTAA 636 0.3758 MEAKSERRGGCVISHTPGAGKTFLVIAFLLVYLIRGRENLRDFDETTLTILGVPNPTDDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGKYFNTVCLARPKFVQEVLKELDTKQKKGNDENPEKAKHLLETRARNFFLDDIANKIG. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06993 211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 166 IPR014001 -
Seca3g06993 211 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 33 IPR044567 GO:0080188
Seca3g06993 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 168 IPR027417 -
Seca3g06993 211 Gene3D - 1 206 IPR038718 -
Seca3g06993 211 Pfam SNF2-related domain 79 175 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06993 Seca-Chr3 164815707 164816446 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g06993 SNF2_N 4.4e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06993 K10875 - gmx:100785036 296.589