Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06986 ATGGCCGAAGCTTTAGTGGCAGGAGCATTTCTATCAGCTTCTGTGCAATCTTTAATCGAGATAATAACAACAGTGCAGTTCAGGGACTTTTTCAGGAAGATCAGGAAGCTGAATGTCTCACTCTTGGATGAGTTGGAAACAACACTGCTCACTCTTCAAGCCGTGCTCAATGATGCAGAACAAAAGCAGTTTTCCAATCCTGCAGTAAAAGAATGGTTGGAACGGCTGCAAGATGCAGTGCATGATGCAGAAGACCTGCTGGATGAAGTTAACACTGAGGCACTCAGACACAAGATGGAGACCCAACATCCCCAACAAACCATTATTGGGAAGGTAAGGAACTTACTTTGTTCTTCTTGTCAGTTTCATGGGGGTGAGAACTCCAAGTTACAGGCCTTGTGCCAAAGACTCCAACGTTTTGCTGCACAGAAAAATGGCCTTGGTTTGCAACTTGTTAGCATGAGGGCCTCAATTAGAGCACCAACAAGCTCTGTGGCAAATGAGTCAGGTGTGGTGGGTAGGGATGGTCATAAGGAGAAGCTAATGAGTTTGATGTTATCAAATGATGCAAACTGTAATAATAACATAGGGGTGATTACAATTTTTGGCATGGGAGGAATTGGCAAAACAACCCTTGCTCAGATTCTCTACAATGATCATAGAGTAGAGGAACATTTTGATCTTAAAGCATGGGCATCTGTTTCTGAAGTCTTTGATGTCACTGTGGTAACAAAAACCCTTCTTGAGTCTGCAGCTTCAAAGCATTTTGAAAATGAAAATCTGAATTTTCTCCAAATTGAATTGAGGCGAATATTGAAAGGCAAAAAATTCTTCTTTGTGTTGGATGACCTTTGGAGTGACAAATATGTTGAGTGGGATGCCCTACGAACTCCCTTTTGTGAGGGAAATCAAGGGAGTAGAATCATCATTACAACACGTCAAAGGGATGTTGCTCAAATGACACATACATTCCCTATTCACCATTTGGAACCATTGTCCCATGATGATTGTTGGTCACTGCTATCCAAGCATGCATTTGAAAATGCAGACCTTAGCAGAAACCCCAACTTGGAAGTAGTTGGTAGAAAGATTGCAGAAAAGTGTAGTGGCTTACCAATTGCTGCAAAGACATTAGGTGGCATATTGCGGTCCAAAGTGGATGAGAATGAGTGGACTAACATTTTGAATAGTAACATATGGGAATTACTAAATGATGATGTTCTACCTGCTCTCTGGTTAAGCTATTTGTATCTCCCTGCTCATTTAAAAAGATGCTTTGCCTATTGCTCAACATTTCCAAAAGCCTTTCCTTTGAATAGGAAACACATAGTACTACTTTGGATGGCTGAGGGTTTGCTTCAACAAGGCCAACAGAAATCAATGGAAAAAATAGGTGATGAATATTTTGATGAACTATTGTCAAGATCATTGATTCAACAAGATGGAGATGATTATGCAATGCATGACCTCATTAATGATTTGGCCAGAGTTGTATCAGGAAGAAGTTGTAGTAGGTCTGAGAGTTGTGAAATATCAGAAACTATACGGTACTTTTCTTATTCTAGAGGTAAGTATGACTCCTCCACCAAGTTTGGGAATTGTTATGGAGCAAAGTGTTTGCGGGTGTTCCTCCCCCTACCATTGAGTGATGATTCAACTTTATGGTGGTACCAGAAACATTACTTGACTAAAAAGTTTACACAGGATTTTCTACATAGACATAAACGCCTTCGAGTGTTATCATTGGCAAACTACAATAACATTACTGAATTGCCTAATTCAATAGGCAATCTGATACACTTGCGATTTTTGGACCTCTCTTTCACTCCAATCATAACATTGCCTAGTACAATATTTAAGCTGTACAATCTTCAAACATTAAGATTGTTATACTGTCAGAACCTCTCTGAATTGCCTGCAGACATAGAAAACCTAGTTAACTTGCGTCATCTTGACACAACTGGCACTAAACTGAAGATGTCAAGACAGATCACCACCCTACAAAATATCCAAACTTTAAGTACTTTGGTTGTTGGTAAAGAGAATGATGAAACAAGGCTTAAAGATTTGAGATATTTCCCAAAACTTCAGGGAAAGCTTTCAATTTTGGAGTTGTGCAATGTGGTTGATACCATAGATGCCATTGAGGCAAACTTGAAGAACAAAGAGCTCATTGAGGAGTTAGTGTTGGATTGGAGCAGGCACACCAGTCAAGGTTCACAAACTCAAACAGAGGTGCTTGAGCTGTTGCAACCATCAACCAATCTCAGGAAACTCATCATTGAATCATATAATGGAACCAAGTTTCCTAACTGGTTGGCAGATTTTTCATTTTCTAATATTTTATATTTGTGTATAAGTGGCTGTAACTTTTGCTACTTTCTCCCACCACTTGGACAACTTCCTTCTCTCAAGGAGCTTCATGTTACAAGGATGAAAATGATAAAGACAGTTGGTCCTGAGTTCTATGGTAGTCTCACCCCTTCTTTTCAACCATTTCCATCTCTTGAGGTTTTATCATTTGAGGAAATGTTAGATTGGGAGGAGTGGCAACTGTTCAGTGGTGAAGGTATTGGGTTCCCTTTTCCATGTCTTAAACATCTACGTTTGTACAATTGTCCTAAGTTGAAGGGTCATTTACCATATCACCTTCCTGCCAGCTTGACAGATGTTAATATATCTTACTGTGATCAGCTAGAAGCATCTACTTTACATTGGATTACATCAACTAAAAGTTTGACTATTATTGATGGAGGCCAACATTTATTGCCAATCCTTGAGAATGATTCACAGTGCTTGCTATCCTACTTAAAGATTGAAAGGAGTGATATACTGACATGTTTTCCAAGAATGGTTCTTAGCAGTAATTGTCTCCGGGAGTTGTATCTCATTAAAATACCATCTCTCACAACCTTCCCAACTGAAAGTATGCAGACTTTACAAACATTACTGTTAACTGAATGCAAGAATTTAGAATTCCTACCAGATGAAGCCTGGGAAAACTACAGTTCACTTGAAAATTTGATGATATGGGACAGTTGTCACTCACTCAGGTGCTTTCCATTAGGTTGTTTCCCTGTGCTCAAATATCTTAGTATCTGGAATTGTCACAATCTCATATCACTTTCCATCTCAGATGTTGAGGCTTCTGCCCAGAGTTTGTCTAGTCTTGAAATATTGAGAATAGGTAGCTGTCCTAATCTGGAATCTTTTCCTCAAGGTGGATTGTCCACTCCCAACCTAATGGAATTTAAGGTCATCAATTGTGGAAAACTTAGATCACTGCCAGAACAGATGTGCACCCTCAATGCTCTTCAAGATCTAGAAATTTCCAATATTCCACAGCTTGTGTCATTTCCTCCTGGTGGTTTGCCACCGAAGTTAAGATCAGTATACATTGGCTTTTGTAAAAGCCTATCACCTATGGCTGTAGCTGAGTATGGTTTCCAGTGGCTTACTTCTCTTTTGAAGTTTGGAATTGGAGGCGATGATCTTGTCCAAGCGTTCTTGGAAGGGAATGCACTTCAACATCTCACCTCTCTTGAGGAGTTTCATATCCTACGTTGTCTAAGGCTTGAATCCTTGCCAGAAGATAGGTTACCTTCCTCTCTTTCTTTACTAAGGATCCAAGACTGTCCTCTATTAGAAGCAAGGTACAAGAATAGGACTGGGAACAGTGGGAAGCATATGTCCAAGATTGCTCACATCCCTACCATAAGAATAAATGAAGAGGTGATAATATAA 3744 0.3966 MAEALVAGAFLSASVQSLIEIITTVQFRDFFRKIRKLNVSLLDELETTLLTLQAVLNDAEQKQFSNPAVKEWLERLQDAVHDAEDLLDEVNTEALRHKMETQHPQQTIIGKVRNLLCSSCQFHGGENSKLQALCQRLQRFAAQKNGLGLQLVSMRASIRAPTSSVANESGVVGRDGHKEKLMSLMLSNDANCNNNIGVITIFGMGGIGKTTLAQILYNDHRVEEHFDLKAWASVSEVFDVTVVTKTLLESAASKHFENENLNFLQIELRRILKGKKFFFVLDDLWSDKYVEWDALRTPFCEGNQGSRIIITTRQRDVAQMTHTFPIHHLEPLSHDDCWSLLSKHAFENADLSRNPNLEVVGRKIAEKCSGLPIAAKTLGGILRSKVDENEWTNILNSNIWELLNDDVLPALWLSYLYLPAHLKRCFAYCSTFPKAFPLNRKHIVLLWMAEGLLQQGQQKSMEKIGDEYFDELLSRSLIQQDGDDYAMHDLINDLARVVSGRSCSRSESCEISETIRYFSYSRGKYDSSTKFGNCYGAKCLRVFLPLPLSDDSTLWWYQKHYLTKKFTQDFLHRHKRLRVLSLANYNNITELPNSIGNLIHLRFLDLSFTPIITLPSTIFKLYNLQTLRLLYCQNLSELPADIENLVNLRHLDTTGTKLKMSRQITTLQNIQTLSTLVVGKENDETRLKDLRYFPKLQGKLSILELCNVVDTIDAIEANLKNKELIEELVLDWSRHTSQGSQTQTEVLELLQPSTNLRKLIIESYNGTKFPNWLADFSFSNILYLCISGCNFCYFLPPLGQLPSLKELHVTRMKMIKTVGPEFYGSLTPSFQPFPSLEVLSFEEMLDWEEWQLFSGEGIGFPFPCLKHLRLYNCPKLKGHLPYHLPASLTDVNISYCDQLEASTLHWITSTKSLTIIDGGQHLLPILENDSQCLLSYLKIERSDILTCFPRMVLSSNCLRELYLIKIPSLTTFPTESMQTLQTLLLTECKNLEFLPDEAWENYSSLENLMIWDSCHSLRCFPLGCFPVLKYLSIWNCHNLISLSISDVEASAQSLSSLEILRIGSCPNLESFPQGGLSTPNLMEFKVINCGKLRSLPEQMCTLNALQDLEISNIPQLVSFPPGGLPPKLRSVYIGFCKSLSPMAVAEYGFQWLTSLLKFGIGGDDLVQAFLEGNALQHLTSLEEFHILRCLRLESLPEDRLPSSLSLLRIQDCPLLEARYKNRTGNSGKHMSKIAHIPTIRINEEVII. 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06986 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 429 IPR027417 -
Seca3g06986 1247 SUPERFAMILY L domain-like 920 1215 - -
Seca3g06986 1247 Gene3D Ribonuclease Inhibitor 933 1125 IPR032675 -
Seca3g06986 1247 Pfam Rx N-terminal domain 10 103 IPR041118 -
Seca3g06986 1247 Gene3D - 413 497 IPR036388 -
Seca3g06986 1247 PANTHER DISEASE RESISTANCE PROTEIN RP 42 873 IPR044974 GO:0006952
Seca3g06986 1247 Gene3D - 331 412 IPR042197 -
Seca3g06986 1247 Coils Coil 69 93 - -
Seca3g06986 1247 PRINTS Disease resistance protein signature 271 285 - -
Seca3g06986 1247 PRINTS Disease resistance protein signature 368 382 - -
Seca3g06986 1247 PRINTS Disease resistance protein signature 198 213 - -
Seca3g06986 1247 PRINTS Disease resistance protein signature 975 991 - -
Seca3g06986 1247 FunFam Probable disease resistance protein At1g61300 152 323 - -
Seca3g06986 1247 Pfam NB-ARC domain 191 396 IPR002182 GO:0043531
Seca3g06986 1247 Gene3D - 30 126 - -
Seca3g06986 1247 SUPERFAMILY L domain-like 487 916 - -
Seca3g06986 1247 Gene3D Ribonuclease Inhibitor 557 930 IPR032675 -
Seca3g06986 1247 Gene3D - 154 324 IPR027417 -
Seca3g06986 1247 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06986 Seca-Chr3 164413969 164418270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06986 195 705 WRKY Transcription Factor Family AT5G45050 22.769 2.71e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06986 - - ahf:112705380 1899.79