Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06982 ATGGCCGAAGATCGGCCCCCTAAACGCGTCAAAATCACTAGGGGGGAAGATGATTACATGCCTGGTAACATTCTTGAGATTGAGCTTTGTAATTTCATGACCTTTGATTACTTAAAATGTAAACCTGGTCCTCGATTGAATCTTGTAATTGGGCCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCCCTTGGCCTCTGTGGGGAGCCCCAGTTGCTTGGGCGAGCCACAAGTATTGGGGCATATGTGAAGCGGGGAGAAGATTCTGGCCACATTAAGATTACCTTGAGAGGGGATCATAAAGAGGAATACATTACCATTATGCGTAAAATAAATACTAACAATAAGTCTGAATGGTTGTTCAATGGAAATGTAGTGCCCAAAAAGGATGTCGCTGAAACCATTCAAAGGTTTAATATCCAAGTCAATAATTTGACTCAATTTTTGCCACAAGACAGGGTCTGTGAGTTTGCAAAGTTAAGTCCTGTGCAACTTTTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAACAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGCATATTGAGCTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAATTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAGTCAATGAAAAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGCAGAATATCGAGAAGCTAAGGAGCGTGAGAATGAGGCAGCAAAGGCATTGGAGGAAGCTGCGAAGTTATTAAATGATCTTAAAGAACCTATTAAGAAGCAAAAAGAGGAGAAGGCTGCATTAGATGCAAAATGTAAAAAGGTAAGCAGCCGCGTAAATGAGAATGCCAAGAAGCGAATGGATCTTTTGCAGAAAGAAAACCAATTGGATGTGGAATTACAAGGAAAGTACAAAGATATGGAAGATTTGAGGAGGGAGGAAGAAACCCGGCAACAACGACTTATAAAAGCTAAGGAGGATCTTGCTGCTGCAGAACATGAACTTGAGAGTCTACACTCTTGTGAAGCTGCCATTGATGAGATTCAAAGACTCAAATCTGAAATTGGGGAGTTTGATTCTCGTGCGTTACAAGCGAGACAGGATAAGTCAAATACAGAAAATGAAATAAAGCTTAAAAAGTCATCCTTGATGCGGTGTAAAGAGAGGATAAAGGAAATGGATAATAAAAGTAACAAGTGTTTGCATGTATTGCAAAAATCTGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTTCAGGAACATCGCCATGAATTCAATAAGGAGGTTTATGGCCCAGTTTTAGCTGAGGTGAATGTCTCAGACCGGCGTCATGCTGCATATCTAGAGGGTCAAGTTGCTCATTACATTTGGAAGTCTTTTGTAACACAAGATCCTCGTGACCGGGACCTTTTGGTGAAGAACCTACAGCGGTGCTTTGATGTACCCATTTTAAATTATACTGGTAGTGATGAACACCAAAGAGTGCCTTTTGAAATTTCTGAAGATATGCATGCTCTTGGTATCTACTCTCGGTTGGACCAAATTTTTGATGCTCCCTTTGCTGTCAAGGAGGTTTTGATCACTCAGTCTAATCTAGACCATTCATATATTGGATCCCAAGAAACTGATCAGAATGCTGTTAAGGTCCCGGAATTGGGAATTATAGATTTATGGACACCAGAGAATCACTACCATTGGTCGAAGTCCAGATATGGAAATCATGTCTCGGCAATGGTTGATCAAGTACAAAACCCGCGAATTTTATTTAGTAATTTGAATGTGGGAGAAATTGAGAAGCTACGTTCCCAGGAAAGGGAGCTTCAAGAACTCATTGCTACCTTGGAGGAAAGTGTTAAAAAGTATCAAGATGATGAAAGAAGCTCAATGAATCAAGCTGCTAATCATCGTAGACAGTGGGAAGACCTTAGTAATACAGTGAAGAATGAGAAAAAAAGACGGCAAGCTATCATTAGCCGTATTGAACAAAGGAAAGGGATACTGAAATCGATGGAGGAGCAGGATGATGTAGATACAGAGATAGCAAAGCTTGTTGATAAGGCTACAAAATGTAACATTCAGCGATTCCATAATGCAATTAAACTTAAGGACATTCTTGTTGAAGCTGTGGGTCACAGACGGAGTTTTGTTGAACAACGTATGGCTTTAATTGAATTTGAAGCAAAGATTGGAGAAATGGAGGCCAATCTAAAGCAGCATGAGAATTTTGCTCTGCAAGCATCATTGTTCTTTGATAAATGTAAAGAAGAGACTGGGAGTTGTAAACAGAAACTGACTGACTCCTTGAACTACGCCAAATCAATTGCTCGACTTACACCTGACCTAGAGAAGGCATTTCTTGAGATGCCTACAACAATTGAGGAATTGGAAGCAGCTATCCAGGATACCACTTCTCAAGCCAATTCAATCCTTTTTGTCAACCATAATATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAGCAAAACTTGAAGCAGACAAGAAGGAATCTAGAAGGTGCATAGCTGAATTAGATAACATTAAGGTCAGTCAAGTGTGA 2646 0.4006 MAEDRPPKRVKITRGEDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEDSGHIKITLRGDHKEEYITIMRKINTNNKSEWLFNGNVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLSPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHIELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLRYDMKQAEYREAKERENEAAKALEEAAKLLNDLKEPIKKQKEEKAALDAKCKKVSSRVNENAKKRMDLLQKENQLDVELQGKYKDMEDLRREEETRQQRLIKAKEDLAAAEHELESLHSCEAAIDEIQRLKSEIGEFDSRALQARQDKSNTENEIKLKKSSLMRCKERIKEMDNKSNKCLHVLQKSGAEKIFEAYKWVQEHRHEFNKEVYGPVLAEVNVSDRRHAAYLEGQVAHYIWKSFVTQDPRDRDLLVKNLQRCFDVPILNYTGSDEHQRVPFEISEDMHALGIYSRLDQIFDAPFAVKEVLITQSNLDHSYIGSQETDQNAVKVPELGIIDLWTPENHYHWSKSRYGNHVSAMVDQVQNPRILFSNLNVGEIEKLRSQERELQELIATLEESVKKYQDDERSSMNQAANHRRQWEDLSNTVKNEKKRRQAIISRIEQRKGILKSMEEQDDVDTEIAKLVDKATKCNIQRFHNAIKLKDILVEAVGHRRSFVEQRMALIEFEAKIGEMEANLKQHENFALQASLFFDKCKEETGSCKQKLTDSLNYAKSIARLTPDLEKAFLEMPTTIEELEAAIQDTTSQANSILFVNHNILEQYEDRQRQIEDLAAKLEADKKESRRCIAELDNIKVSQV. 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06982 881 Coils Coil 247 317 - -
Seca3g06982 881 Coils Coil 194 235 - -
Seca3g06982 881 Coils Coil 838 865 - -
Seca3g06982 881 Coils Coil 747 767 - -
Seca3g06982 881 Coils Coil 365 385 - -
Seca3g06982 881 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 877 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Seca3g06982 881 Pfam AAA domain 27 280 IPR038729 GO:0006302|GO:0016887
Seca3g06982 881 Coils Coil 331 351 - -
Seca3g06982 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 314 IPR027417 -
Seca3g06982 881 Coils Coil 622 649 - -
Seca3g06982 881 Gene3D - 23 228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06982 Seca-Chr3 164115599 164146171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06982 4 877 Structural Maintenance of Chromosomes family AT5G15920 57.666 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06982 K22803 - gmx:100778678 1360.13