Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06954 ACATGTAAATATATTTTTCCCTACTACAGGCACAAATACCTGTCTATCCGTCCCAGTATTTTTACATCTTTCCCCCCAATAACATGTAGCTTTTTGTTTATAATCATCTATATCAAGATATTAAGTCTAGATGAAACCAACAAAACAATACCTTTATACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGGAATGGAATCTCCATGCCCTTGATGACCTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAACACTAAAGAAGTTTTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGCGGGTACTTTTGTTGCATCACTATTGCAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTCAAACATTTTTGAGACAAGATGTGACCTTTTTTGATAAGGAAACTAATACTGGAGATGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGCGAGAAGGTACAATTAATGAACCACCATACATGTCCTAAATCATCAACATTAAAGAAAGTTTTTAACGTCAATTTTGTTTGTTTACTATTTATTTAA 651 0.3548 TCKYIFPYYRHKYLSIRPSIFTSFPPITCSFLFIIIYIKILSLDETNKTIPLYKLFSFADSLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSTNTKEVFDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLQTFLRQDVTFFDKETNTGDVIGRMSGDTVLIQDAMGEKVQLMNHHTCPKSSTLKKVFNVNFVCLLFI. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06954 216 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 68 191 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g06954 216 Pfam ABC transporter transmembrane region 67 191 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g06954 216 SUPERFAMILY ABC transporter transmembrane region 54 187 IPR036640 GO:0005524|GO:0016020
Seca3g06954 216 PANTHER ABC TRANSPORTER B FAMILY 45 196 IPR039421 -
Seca3g06954 216 Gene3D ABC transporter type 1, transmembrane domain 46 196 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06954 Seca-Chr3 163044830 163045684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06954 114 196 Calmodulin-binding Proteins AT2G36910 28.409 3.29e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06954 K05658 - gmx:100800293 256.529