Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06952 ATGGTGAAGGTTGAAGAACAAGAAGGGTCTGAGCAGGGAATTAGGTGTCCAATCTGTTTTGAAGATTTTCTTCTTGCTGTTCGTATGGCATGTTTGCATATGTTTCATAGAAATTGTATCCATGGTTGGTTGAAAGTAGGCAATTCTTGCCCTTTATGTCGGTTTCAGATGCCTACTAGTGAAAGTGATTGA 192 0.3958 MVKVEEQEGSEQGIRCPICFEDFLLAVRMACLHMFHRNCIHGWLKVGNSCPLCRFQMPTSESD. 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06952 63 SUPERFAMILY RING/U-box 9 59 - -
Seca3g06952 63 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
Seca3g06952 63 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Seca3g06952 63 Pfam Ring finger domain 15 54 IPR001841 -
Seca3g06952 63 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 58 - -
Seca3g06952 63 SMART ring_2 16 53 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06952 Seca-Chr3 163033628 163033819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06952 7 63 C3H Transcription Factor Family AT5G01980 43.333 4.56e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06952 K22378 - cam:101499491 91.2781