Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06945 ATGGAGGCCGCAGTGGTCGACGCCGGTTCCAGCCTCCTCAAAGCCGGTTTTGCAATACCCGATCAAACTCCAGCCTTGATAATTCCCACCCAGATGAAACGCATGCTCGATGATGGGTCAGTGACTGATAATCCGTTAGTCGATGATGTTGCCGTTGATCCTGTCGTGCGAGGTTACATCAGAGATTGGGATGCCATCGAGGATTTGTTGCATTATGTTTTGTACACTGGCCTTGGATGGGAAATAGGCAATGAAGGACAAATACTATTTACTGATCCCCTCTGTACTCCCAAGGCTAACAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCGGAACAAGCAGTATTGTCACTATATGCCGTGGGACGTATTTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTGATTGAGGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAATTTGGTGGTGCTGAACTTACTAATTTTCTGGCTCAAGAACTTGGCAAATCCAATCCGCTAGTGAATATCAGCATGTCTGATGTTGAGAAAATAAAACAGCAATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAGAAGACCCGAGATTCTTGCCCTGTGGAGACACATACCCTTCCTGATGGACAGGTCTGCCGTTTAGTTCCTCTATCTAATAGTTATGACTTAGTGATAACAATTGGAAGAGAAAGATATACTGTTGGTGAAGCTTTATTCCAACCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTACTATTTCAACTGTGTCATCTGATAATCATCGGCAACTTCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGACTGGTTTTGAAGAGAGATTTCAGAAGGAGTCTTGCCTAAGTTCATCCGCTGTTCGGCCTACCCTGGTTAAGCCTCCGGAATATATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCAATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACCAAGGCGGACTATGATGAAAATGGACCTTCCATTGTGCACCGGAAATGCTTCTGA 1125 0.4338 MEAAVVDAGSSLLKAGFAIPDQTPALIIPTQMKRMLDDGSVTDNPLVDDVAVDPVVRGYIRDWDAIEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGAELTNFLAQELGKSNPLVNISMSDVEKIKQQYSCCAEDELAYQKTRDSCPVETHTLPDGQVCRLVPLSNSYDLVITIGRERYTVGEALFQPCLLGLEAHGIVEQLVRTISTVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESCLSSSAVRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06945 374 SUPERFAMILY Actin-like ATPase domain 131 374 IPR043129 -
Seca3g06945 374 Gene3D - 123 337 - -
Seca3g06945 374 PRINTS Actin signature 125 144 IPR004000 -
Seca3g06945 374 PRINTS Actin signature 100 113 IPR004000 -
Seca3g06945 374 PRINTS Actin signature 217 233 IPR004000 -
Seca3g06945 374 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Seca3g06945 374 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Seca3g06945 374 SMART actin_3 1 374 IPR004000 -
Seca3g06945 374 Pfam Actin 2 374 IPR004000 -
Seca3g06945 374 Gene3D - 5 368 - -
Seca3g06945 374 PANTHER ACTIN 4 367 IPR004000 -
Seca3g06945 374 Gene3D Actin; Chain A, domain 4 165 265 - -
Seca3g06945 374 FunFam Actin-related protein 7 165 265 - -
Seca3g06945 374 FunFam Actin-related protein 7 4 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06945 Seca-Chr3 162857052 162868452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06945 1 374 Cytoskeleton Gene Families AT1G49240 35.025 5.65e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06945 K16615 - gmx:100794153 676.781