Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06930 TCCCCATTCAGCGTCGTTTACTCCTTCTCTCTACCCGAGCCCTTCTCTCTCTCACTGTCCCCCTCTCTCTCACCCGTTACTCCATTCGCTTTGTTAGGGTTCAAGACTTCAAGCAGGTTCTCCCTTTCGAGCTTCCCCTCGCCGTCGGTGCCTCCGCTGCGAGCCCCAAACGACCTCAAAGCAATTGAGCTCCTCCGTCGTCATCGTTTCGGTGCAGTGGCTGCAGGGTACAGGTTGAGCTCTCGCCTCGGAGGCAACCGAAACGCCGCACTAGGAGGCGGCTTCGCTCTCGAAGGCACTAACAGCGTTGCCGCTTACGCTCTAATTGCCTATACTCTACAAGAATGCTTGAGATTCAATCCAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTGTGTGAGGACTGGTTTCATGAGGAGCATATTGGTCTTGAGTCTCCTGATGAGATTCCCAGAGATGATGAAGGAGAGCCGCTCTATGAGGATTTCATATGTAAGGCATGCTCTGAAGTATGTTTCTTTATAAAATTATATCCTGAAGTAATATGGACAGCAGGAAAGCAGCCAGCTGCTACTGTCCAAGCTAGCAAGGACAAAGAGGAGTTGATATTCCAATTCACTTGGATAATGAGGAAACCACGTCCATTAATATTCCTGGAAAGAAACGCATATTGGATAGCTCCAGAGGTTATTAAGAACTCTGATGATAACAACCTTGCCGCGGATATATGGAGTGTTGGATGCACAGTTTTAGAAATGACAACAGCTATGCCTCCTTGGGGTCAGTATGAAAGGAGTGCTGCCATGTTCAAAATTGTTCATGGGAAGGAACTCCCACCAATCCCAGATGATGTGTCTAGTGAAGGAAAAGATTTTGTTATGAAATGTCTACAACGTGATGCACACAATCGCCCTTCAGCCATTGAATTATTGGACCACCCTTTTGTAAAATCTGCTGCGCCTTTAGGAAAACATATTCTGTGGCCTGAAGCAGAGAACCCAGCACATGAAGCAGAAGCTCTGGGCATTGAAGAAATGAAGGATGGGCTTCGTTCTTTCCTGGAAATCATTGGTAATGGCACATACATAGCTGTTAATAAACTTGGACACGTAGAGAAAGTGGAGATCTTGAAGGGCATTGAAGAAATGAAGGATGGGCTTCGTTCTTTCCTGGTATGTTTTCTATATTTATTTTGGATTACAAATATATTTTAA 1221 0.4562 SPFSVVYSFSLPEPFSLSLSPSLSPVTPFALLGFKTSSRFSLSSFPSPSVPPLRAPNDLKAIELLRRHRFGAVAAGYRLSSRLGGNRNAALGGGFALEGTNSVAAYALIAYTLQECLRFNPDAEEQVEMIQCCLCEDWFHEEHIGLESPDEIPRDDEGEPLYEDFICKACSEVCFFIKLYPEVIWTAGKQPAATVQASKDKEELIFQFTWIMRKPRPLIFLERNAYWIAPEVIKNSDDNNLAADIWSVGCTVLEMTTAMPPWGQYERSAAMFKIVHGKELPPIPDDVSSEGKDFVMKCLQRDAHNRPSAIELLDHPFVKSAAPLGKHILWPEAENPAHEAEALGIEEMKDGLRSFLEIIGNGTYIAVNKLGHVEKVEILKGIEEMKDGLRSFLVCFLYLFWITNIF. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06930 406 CDD PHD_UBR7 116 170 - -
Seca3g06930 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 173 IPR013083 -
Seca3g06930 406 ProSiteProfiles Protein kinase domain profile. 1 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06930 406 SMART serkin_6 59 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06930 406 SUPERFAMILY FYVE/PHD zinc finger 126 180 IPR011011 -
Seca3g06930 406 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 224 323 - -
Seca3g06930 406 SUPERFAMILY Protein kinase-like (PK-like) 223 321 IPR011009 -
Seca3g06930 406 Pfam Protein kinase domain 225 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06930 406 Gene3D Transferase(Phosphotransferase) domain 1 209 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06930 Seca-Chr3 162324141 162327028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06930 217 345 MAP Kinase Kinase Kinase AT1G63700 57.364 3.67e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g06930 Pkinase 1.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06930 K20717 K11979 gmx:100817441 171.4