Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06918 ATGGCATATAAGGGAGAAGTGAAAGCAACTGTGACCACTGTCTTTCCCCTTCCCCCTGAAGAGGAGAAGGCACTGAAGGAGACTCTTCAGGAAATCATAGGTTCGGGGGTAAAGGTTAAGCTTGAACAGAAGATTGATCCAAGCATACTTGGTGGTCTAGTGTTGGAATTTAGCCAGAAGGTCTTTGACATGTCTATCAAGACTAGGGCACAGCAGATGGAGAGGATCCTCCGAGAGCCCATAAATATCTCCAATATCTGA 261 0.4598 MAYKGEVKATVTTVFPLPPEEEKALKETLQEIIGSGVKVKLEQKIDPSILGGLVLEFSQKVFDMSIKTRAQQMERILREPINISNI. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06918 86 Pfam ATP synthase delta (OSCP) subunit 2 77 IPR000711 GO:0015986|GO:0046933
Seca3g06918 86 PRINTS ATP synthase delta subunit signature 52 70 IPR000711 GO:0015986|GO:0046933
Seca3g06918 86 PRINTS ATP synthase delta subunit signature 37 52 IPR000711 GO:0015986|GO:0046933
Seca3g06918 86 PANTHER ATP SYNTHASE DELTA CHAIN 1 79 IPR000711 GO:0015986|GO:0046933
Seca3g06918 86 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 39 58 IPR020781 GO:0015986|GO:0016020|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06918 Seca-Chr3 159007004 159008167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06918 2 86 Primary Pumps ATPases AT5G13450 69.412 2.92e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06918 K02137 - gmx:100790990 146.362