Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06915 ATGGAAGCACATGAGAAGGACATATATATATATGATAATTGCAGATTTAGAGGAGAGGTGGATGACAAGTACCAATACTCAATTAAGAACACAGACAACAATGTTAATGGTTGGATTGACACAGATTCTAGACCAACTATAGGTTTTTGGATCTTAACACCTAGTAATGAATTTCACAACTGTGGGCCCATCAAGCAAGACCTCACCTCTCATGTTGGCCCAACTGCCTTCTCCATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTCACCATGTCATTTCAAGAAGGAGAGACTTATAAAAAGGTTTTTGGCCCTGTTTTTGTCTACCTTAATTCTGCATCAAGTGATGTCCATTTCCAATCTCTATGGTCAAATGCTGTGCAACAAGTCATTATTATTATTTACCCCTAA 414 0.3937 MEAHEKDIYIYDNCRFRGEVDDKYQYSIKNTDNNVNGWIDTDSRPTIGFWILTPSNEFHNCGPIKQDLTSHVGPTAFSMFVSTHYAGKEVTMSFQEGETYKKVFGPVFVYLNSASSDVHFQSLWSNAVQQVIIIIYP. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06915 137 SUPERFAMILY Galactose mutarotase-like 18 115 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca3g06915 137 Gene3D - 2 127 IPR014718 GO:0030246
Seca3g06915 137 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06915 Seca-Chr3 158857386 158858236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06915 13 132 Polysaccharide Lyase AT4G37950 60.833 2.31e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06915 K18195 - gmx:100791732 185.267