Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca3g06907 | ATGTGCGGTGGTCCTGAGAAATCAAAATCTCCTTCAACTTCATCTTCATCTTCATCTGCAGTCGAAGGTTCAGGTTCAGCTAACGTCAAAGACATGAATAATCTAACTGTTCATACTGAAGATTCTTTTTCCAGTATACTTGAACTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAACTATAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAAAATGGATCCAAACAAATTGTTCTGGAGCATAGAACTCCTCTAATGGTTGCTGCTACCTATGGGAGTGTTGATGTTTTAAAGCTTATACTCTCATGTCCGGAGGCTGATGTAAATTTCTCCTGTGGGACTGATAAAAGCACTGCCCTTCATTGTGCTGCTTCAGGTGGTGCTGTTAATGCAGTTGATGTTGTGAAGCTGCTTTTATCAGCTGGCGCTGATATCAGTGTTGTCGATGCTAATGGAAATTGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCCAAGGTATGAAAACAATGCTTGAAGAATTTCTCTCAGATTGTGCTTCTGATGGGTCTGTTGATGACTGCTCCCTTCCAGTTTCGGCTAATTCATCAAGTCTTGGTTTAGCTGCTCATTTATCATCACTTGATAATGGGTTGCCATCCTCTCCTTTGGTCTCAAAGTGTACTGAGACAGCTGTCAATCCTGCATCAGACAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATAAAAAACAGCATATATTCAACAGATGAGTTTCGGATGTTTTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGGGAGAATGCTCGTAGGAGAGATCCCAGAAAATTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGTTTTTTTGCTCACACAGCCGAAGAGCTCCGTCCGTTGTATGTATCCACTGGATCTGCTGTTCCTTCACCTCGATCATCTGCTGCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTGGTTCGCCTTCATCAATCTCTTCCATGTCTCCATCTCCTTTTGCACAGCCAACATCTCCATCTGCAAATAGCATATCTCACTCATCTCCTGCATGGCCACAGCCAAATGTGCCAGCTCTTCATTTACATGGAAGCAATGCTCAAACAAGTCGTTTGAGATCTTCTCTTAGTGCTCGAGACATGCCACCTGAAGACTTGAATGTTTTACAAGACTTTGATGGCCAGCAACACCTTTTGAATGAATATGGCTGTTTCTCACAGCCCCATCCTGGTGCCATTTCAATGAGTAGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCCCCAAGGTATTCTGACCCGGCAGCAGCTTCTGTATTTTCTCCCACACACAAATCAGCTGTTCTCAATCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAATGTCTTGTCTCCTAAGAATTTTGATCATCCTCTGTTACAGGCTTCATTTGGTGTCACTTCTCCTGGAAGGATGTCACCAAGAAGTTTGGAATCCCTTTCTCCCATGAGCTCTCGGTTATCAGCATTTGCTCAGCATGAGAAACAGCAGCAACAGCTGCGGAGCTTTAGCTCAAGGGATCTTGGTGCTAACAGTCTTGTGTCTGTTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGCAAGAGCCTGATCTATCCTGGGTCCAGTCTCTTGTCAAGGAGTCCCCACCTGAAATAAAAGAGAAATTGGCAGGTTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATCCTCAAGTAGAGTCTATTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGTTGGATCAGCTTGTAGTCTAG | 2181 | 0.4347 | MCGGPEKSKSPSTSSSSSSAVEGSGSANVKDMNNLTVHTEDSFSSILELASNNDFEDFKLTIDRDASLINEVGLWYVRQNGSKQIVLEHRTPLMVAATYGSVDVLKLILSCPEADVNFSCGTDKSTALHCAASGGAVNAVDVVKLLLSAGADISVVDANGNCPVDVIVVPPKLQGMKTMLEEFLSDCASDGSVDDCSLPVSANSSSLGLAAHLSSLDNGLPSSPLVSKCTETAVNPASDKKEYPIDPSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSAAAPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPTSPSANSISHSSPAWPQPNVPALHLHGSNAQTSRLRSSLSARDMPPEDLNVLQDFDGQQHLLNEYGCFSQPHPGAISMSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSSLSPINTNVLSPKNFDHPLLQASFGVTSPGRMSPRSLESLSPMSSRLSAFAQHEKQQQQLRSFSSRDLGANSLVSVVGSPINSWSKWGSPNGKVDWSVNGNELGRLQRSSSFELGNNGQEPDLSWVQSLVKESPPEIKEKLAGSGPIASADGLNSNPQVESIDHSVLGAWLEQMQLDQLVV. | 727 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca3g06907 | 726 | ProSiteProfiles | Ankyrin repeat region circular profile. | 123 | 157 | - | - | |
Seca3g06907 | 726 | Gene3D | - | 5 | 219 | IPR036770 | - | |
Seca3g06907 | 726 | MobiDBLite | consensus disorder prediction | 7 | 32 | - | - | |
Seca3g06907 | 726 | SUPERFAMILY | Ankyrin repeat | 38 | 168 | IPR036770 | - | |
Seca3g06907 | 726 | ProSiteProfiles | Zinc finger C3H1-type profile. | 306 | 328 | IPR000571 | GO:0046872 | |
Seca3g06907 | 726 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Seca3g06907 | 726 | ProSiteProfiles | Ankyrin repeat profile. | 123 | 158 | IPR002110 | GO:0005515 | |
Seca3g06907 | 726 | FunFam | Zinc finger CCCH domain-containing protein 66 | 259 | 327 | - | - | |
Seca3g06907 | 726 | MobiDBLite | consensus disorder prediction | 402 | 429 | - | - | |
Seca3g06907 | 726 | SMART | ANK_2a | 123 | 155 | IPR002110 | GO:0005515 | |
Seca3g06907 | 726 | SMART | ANK_2a | 88 | 118 | IPR002110 | GO:0005515 | |
Seca3g06907 | 726 | Pfam | Ankyrin repeats (3 copies) | 80 | 156 | IPR002110 | GO:0005515 | |
Seca3g06907 | 726 | PANTHER | UNKEMPT FAMILY MEMBER | 48 | 678 | IPR045234 | - | |
Seca3g06907 | 726 | Gene3D | - | 301 | 364 | - | - | |
Seca3g06907 | 726 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 306 | 326 | IPR000571 | GO:0046872 | |
Seca3g06907 | 726 | PRINTS | Ankyrin repeat signature | 89 | 104 | IPR002110 | GO:0005515 | |
Seca3g06907 | 726 | PRINTS | Ankyrin repeat signature | 142 | 156 | IPR002110 | GO:0005515 | |
Seca3g06907 | 726 | SMART | c3hfinal6 | 301 | 327 | IPR000571 | GO:0046872 | |
Seca3g06907 | 726 | SMART | c3hfinal6 | 336 | 359 | IPR000571 | GO:0046872 | |
Seca3g06907 | 726 | MobiDBLite | consensus disorder prediction | 402 | 438 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca3g06907 | Seca-Chr3 | 158106957 | 158109204 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca3g06907 | 1 | 723 | C2H2 Transcription Factor Family | AT5G12850 | 53.691 | 0.0 | 688 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca3g06907 | Ank_2 | 1.5e-09 | CL0465 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca3g06907 | - | - | gmx:100792574 | 1179.08 |