Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06907 ATGTGCGGTGGTCCTGAGAAATCAAAATCTCCTTCAACTTCATCTTCATCTTCATCTGCAGTCGAAGGTTCAGGTTCAGCTAACGTCAAAGACATGAATAATCTAACTGTTCATACTGAAGATTCTTTTTCCAGTATACTTGAACTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAACTATAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCCTCTGGTATGTCCGCCAAAATGGATCCAAACAAATTGTTCTGGAGCATAGAACTCCTCTAATGGTTGCTGCTACCTATGGGAGTGTTGATGTTTTAAAGCTTATACTCTCATGTCCGGAGGCTGATGTAAATTTCTCCTGTGGGACTGATAAAAGCACTGCCCTTCATTGTGCTGCTTCAGGTGGTGCTGTTAATGCAGTTGATGTTGTGAAGCTGCTTTTATCAGCTGGCGCTGATATCAGTGTTGTCGATGCTAATGGAAATTGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCCAAGGTATGAAAACAATGCTTGAAGAATTTCTCTCAGATTGTGCTTCTGATGGGTCTGTTGATGACTGCTCCCTTCCAGTTTCGGCTAATTCATCAAGTCTTGGTTTAGCTGCTCATTTATCATCACTTGATAATGGGTTGCCATCCTCTCCTTTGGTCTCAAAGTGTACTGAGACAGCTGTCAATCCTGCATCAGACAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATAAAAAACAGCATATATTCAACAGATGAGTTTCGGATGTTTTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGGGAGAATGCTCGTAGGAGAGATCCCAGAAAATTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGCAATAGAAGGGTATGTTTTTTTGCTCACACAGCCGAAGAGCTCCGTCCGTTGTATGTATCCACTGGATCTGCTGTTCCTTCACCTCGATCATCTGCTGCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTGGTTCGCCTTCATCAATCTCTTCCATGTCTCCATCTCCTTTTGCACAGCCAACATCTCCATCTGCAAATAGCATATCTCACTCATCTCCTGCATGGCCACAGCCAAATGTGCCAGCTCTTCATTTACATGGAAGCAATGCTCAAACAAGTCGTTTGAGATCTTCTCTTAGTGCTCGAGACATGCCACCTGAAGACTTGAATGTTTTACAAGACTTTGATGGCCAGCAACACCTTTTGAATGAATATGGCTGTTTCTCACAGCCCCATCCTGGTGCCATTTCAATGAGTAGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCCCCAAGGTATTCTGACCCGGCAGCAGCTTCTGTATTTTCTCCCACACACAAATCAGCTGTTCTCAATCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAATGTCTTGTCTCCTAAGAATTTTGATCATCCTCTGTTACAGGCTTCATTTGGTGTCACTTCTCCTGGAAGGATGTCACCAAGAAGTTTGGAATCCCTTTCTCCCATGAGCTCTCGGTTATCAGCATTTGCTCAGCATGAGAAACAGCAGCAACAGCTGCGGAGCTTTAGCTCAAGGGATCTTGGTGCTAACAGTCTTGTGTCTGTTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAAATGAGCTAGGTCGATTGCAAAGATCATCCTCATTTGAGCTTGGAAACAATGGGCAAGAGCCTGATCTATCCTGGGTCCAGTCTCTTGTCAAGGAGTCCCCACCTGAAATAAAAGAGAAATTGGCAGGTTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATCCTCAAGTAGAGTCTATTGATCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGTTGGATCAGCTTGTAGTCTAG 2181 0.4347 MCGGPEKSKSPSTSSSSSSAVEGSGSANVKDMNNLTVHTEDSFSSILELASNNDFEDFKLTIDRDASLINEVGLWYVRQNGSKQIVLEHRTPLMVAATYGSVDVLKLILSCPEADVNFSCGTDKSTALHCAASGGAVNAVDVVKLLLSAGADISVVDANGNCPVDVIVVPPKLQGMKTMLEEFLSDCASDGSVDDCSLPVSANSSSLGLAAHLSSLDNGLPSSPLVSKCTETAVNPASDKKEYPIDPSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSAAAPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPTSPSANSISHSSPAWPQPNVPALHLHGSNAQTSRLRSSLSARDMPPEDLNVLQDFDGQQHLLNEYGCFSQPHPGAISMSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSSLSPINTNVLSPKNFDHPLLQASFGVTSPGRMSPRSLESLSPMSSRLSAFAQHEKQQQQLRSFSSRDLGANSLVSVVGSPINSWSKWGSPNGKVDWSVNGNELGRLQRSSSFELGNNGQEPDLSWVQSLVKESPPEIKEKLAGSGPIASADGLNSNPQVESIDHSVLGAWLEQMQLDQLVV. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06907 726 ProSiteProfiles Ankyrin repeat region circular profile. 123 157 - -
Seca3g06907 726 Gene3D - 5 219 IPR036770 -
Seca3g06907 726 MobiDBLite consensus disorder prediction 7 32 - -
Seca3g06907 726 SUPERFAMILY Ankyrin repeat 38 168 IPR036770 -
Seca3g06907 726 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Seca3g06907 726 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g06907 726 ProSiteProfiles Ankyrin repeat profile. 123 158 IPR002110 GO:0005515
Seca3g06907 726 FunFam Zinc finger CCCH domain-containing protein 66 259 327 - -
Seca3g06907 726 MobiDBLite consensus disorder prediction 402 429 - -
Seca3g06907 726 SMART ANK_2a 123 155 IPR002110 GO:0005515
Seca3g06907 726 SMART ANK_2a 88 118 IPR002110 GO:0005515
Seca3g06907 726 Pfam Ankyrin repeats (3 copies) 80 156 IPR002110 GO:0005515
Seca3g06907 726 PANTHER UNKEMPT FAMILY MEMBER 48 678 IPR045234 -
Seca3g06907 726 Gene3D - 301 364 - -
Seca3g06907 726 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
Seca3g06907 726 PRINTS Ankyrin repeat signature 89 104 IPR002110 GO:0005515
Seca3g06907 726 PRINTS Ankyrin repeat signature 142 156 IPR002110 GO:0005515
Seca3g06907 726 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Seca3g06907 726 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Seca3g06907 726 MobiDBLite consensus disorder prediction 402 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06907 Seca-Chr3 158106957 158109204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06907 1 723 C2H2 Transcription Factor Family AT5G12850 53.691 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g06907 Ank_2 1.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06907 - - gmx:100792574 1179.08