Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06898 ATGGCTCAGAAAACAGAGAAAGAAGAAACTGAGTTCAAGGTTCCCGAAACCATCACCTCATGCATCAACAACTGCGGTGTCACCGGCAACCCTGCAACCAACAACATGTGCCAGAAATGCTTCGCCGCATCCACCGCCACCACTTCCTCCGCCGGAAACTTGCCTGCATCTTCCAGATCCATTCGCTCCCCCAAGAGATCCTTCCCGGAAGAGCCCGTGCAGATCGCCAATCCTCCCGCATCTGATCAAACGACACCTTCCGAGGCCAAGCGCGTGGTGAGCCGATGCTCTGGCTGCCGACGAAAGGTCGGACTGACCGGCTTCCGGTGCCGGTGCGGCGAACTCTTCTGCGCCGAGCACCGGTACTCCGATCGCCACGAGTGCACCTACGACTACAAAGCCGCGGGAAGGGAAGCCATAGCCAGGGAGAACCCCGTGATCCGAGCCGCGAAGATCGTCAAGGTCTGA 468 0.5897 MAQKTEKEETEFKVPETITSCINNCGVTGNPATNNMCQKCFAASTATTSSAGNLPASSRSIRSPKRSFPEEPVQIANPPASDQTTPSEAKRVVSRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHECTYDYKAAGREAIARENPVIRAAKIVKV. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06898 155 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Seca3g06898 155 MobiDBLite consensus disorder prediction 48 63 - -
Seca3g06898 155 Pfam A20-like zinc finger 21 41 IPR002653 GO:0003677|GO:0008270
Seca3g06898 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 54 - -
Seca3g06898 155 FunFam Zinc finger AN1-type containing 6 70 151 - -
Seca3g06898 155 SMART AN1_Zf_4 96 133 IPR000058 GO:0008270
Seca3g06898 155 Gene3D - 72 151 IPR035896 -
Seca3g06898 155 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 154 - -
Seca3g06898 155 MobiDBLite consensus disorder prediction 48 87 - -
Seca3g06898 155 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Seca3g06898 155 SUPERFAMILY AN1-like Zinc finger 81 149 IPR035896 -
Seca3g06898 155 Pfam AN1-like Zinc finger 96 133 IPR000058 GO:0008270
Seca3g06898 155 Gene3D - 1 65 - -
Seca3g06898 155 ProSiteProfiles Zinc finger AN1-type profile. 90 136 IPR000058 GO:0008270
Seca3g06898 155 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06898 Seca-Chr3 157031867 157032334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06898 8 155 C2H2 Transcription Factor Family AT3G52800 35.838 1.83e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06898 - - gmx:100787293 274.248