Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06897 ATGAGGGTTATAAAAGATGTGGCTTCTGCAGTCTTATACTTGCATGAAGGGTGGGAAGCCAAAGTAGTGCATAGGGACATTAAGGCTAGTAATGTGTTGTTGGATAAAGATATGGATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCACAGCCACGGTCAAATTTCTAGCACCTCAAAATTGGTTGGAACAGTTGGGTACATGGCTCCTGAAGTGATTAGGACGGGATGA 234 0.4402 MRVIKDVASAVLYLHEGWEAKVVHRDIKASNVLLDKDMDGRLGDFGLARMHSHGQISSTSKLVGTVGYMAPEVIRTG. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06897 77 Pfam Protein kinase domain 3 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06897 77 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Seca3g06897 77 PANTHER - 2 75 - -
Seca3g06897 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06897 77 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
Seca3g06897 77 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06897 Seca-Chr3 156851011 156851244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06897 1 77 Receptor kinase-like Gene Family AT4G04960 67.532 3.35e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca3g06897 Pkinase 4.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06897 - - gsj:114386544 145.206