Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06896 ATGTCTAAGAGGATCCTTTGTAAGTTCTTTGCTCACGGAGCATGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGTACATTTTATCAGAAAGGTGTCTGTGCTTATGGTAGTCACTGCAGATATGATCATGTCAAAGCTTCTCGAGCACAGCCCTCCTCTCCATCTTCTTCAGTTATCGCACACCAGCCCCTTGTTTCAGATTCTGCTGTTTTTGGTAATACTAGAATTAAATCAAACGATGTTGTTACAGGTGCAGAGTTTTCCCTTTCCCACAGTCCTTACCTTCTTCCCAGTAAACCAGCCTGGAATCAAGAATCTGAGAATCATGATTTTTTAGGGGAAGATAATGTTAGTCAATCCATAATTACTTCACCTGCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGCAATTGTCCAAGAGGGGAAAAATGTCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGTTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATACGAAGAATTGTGAAAATAAACAAAAGCATCTCGAGGCATTGAAACAAAGTCAAGAAATTGAATGCAGTGTTTGCCTAGAACGTGTTCTTTCAAAGCCTACTGCAGCTGAACGTAAGTTTGGGCTGTTATCTGAATGTGATCATCCATTCTGCATATCCTGTATAAGGAATTGGCGTAGCAGTAACCCAACATTAGGGATGGATGTTAATAGCACATTGAGGGCTTGTCCTATCTGTCGCAAGCTATCTTACTTTGTCATTCCAAGTGTTATTTGGTACTCTACAAGTGAAGAAAAACAGGAAATCATTGATACCTACAAGGCAAAGCTCAAGTCAATTGACTGCAAGCATTTTGACTTTGGGGATGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGCAGGTAGTTTTGCGACATCTTGGGGCTGCAGATGGCAATGCTGTAATTGCCAAAGACATCAGGCTGTCAGATTTCCTTGCTAACATGCATTTAAGATGA 1074 0.4134 MSKRILCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSHCRYDHVKASRAQPSSPSSSVIAHQPLVSDSAVFGNTRIKSNDVVTGAEFSLSHSPYLLPSKPAWNQESENHDFLGEDNVSQSIITSPAELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHTKNCENKQKHLEALKQSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTSEEKQEIIDTYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNAVIAKDIRLSDFLANMHLR. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06896 357 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Seca3g06896 357 CDD RING-HC_MKRN 202 262 - -
Seca3g06896 357 ProSiteProfiles Zinc finger RING-type profile. 204 262 IPR001841 -
Seca3g06896 357 SMART ring_2 204 261 IPR001841 -
Seca3g06896 357 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Seca3g06896 357 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Seca3g06896 357 SMART c3hfinal6 291 319 IPR000571 GO:0046872
Seca3g06896 357 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Seca3g06896 357 Coils Coil 179 199 - -
Seca3g06896 357 Gene3D - 33 162 - -
Seca3g06896 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 299 IPR013083 -
Seca3g06896 357 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Seca3g06896 357 Gene3D - 1 32 - -
Seca3g06896 357 Pfam Zinc finger, C3HC4 type (RING finger) 204 261 IPR018957 GO:0046872
Seca3g06896 357 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Seca3g06896 357 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Seca3g06896 357 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Seca3g06896 357 PANTHER MAKORIN-RELATED 5 337 IPR045072 GO:0000209|GO:0061630
Seca3g06896 357 SUPERFAMILY RING/U-box 192 268 - -
Seca3g06896 357 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Seca3g06896 357 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Seca3g06896 357 Pfam RNA-binding, Nab2-type zinc finger 140 159 - -
Seca3g06896 357 Pfam RNA-binding, Nab2-type zinc finger 296 318 - -
Seca3g06896 357 ProSiteProfiles Zinc finger C3H1-type profile. 291 320 IPR000571 GO:0046872
Seca3g06896 357 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06896 Seca-Chr3 156840883 156846852 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g06896 zf-C3HC4 2.9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06896 K15687 - gmx:100817071 660.218