Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06890 ATGAGTGTTATGCATAGTCCTGTTCTCAAGTACTCAGATGGGGAGCTAAGAAGAAACGAAGAAATGGATTCAAGTATTGGACATCCACAACAACACTGTCACCAGCATAATTCTGGACTAATCCAGAGGTACCGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTGTTGACAACAACATTAATGAGGAAGGTTTCACAAGTTCAGAAATGTTGATATGGAGCAATTCGGAAGAGTATGGATATGGAGGCAAGCCTGTGAAGCAGGAAGCAGGGGAATCGGGTACACAACAACAGAGCGGTTATTCTTATGGTGGATGTGGATCTCAGTTAGTTTACCAATCACAACAAATTCAATGCTTGCCAAATTCCTTTTATACTTCTTCTATGGCTTCACAAAACTCCACTCAATCTAAAATGGGTATCAGGAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGTTTTTTCTCCAATGAAAATGCATTGAGAGGCGTAGGAAGCTTTAAAGCTGGTGATGTCTCAAATGGACAGGCTACTGGCACTGCATCATCCTCGTGCTTGAAATGGATGCCCCAAATAGCTGAAAATGGAAACGAAAGCCTAGAAGCAAATAGAAACCTGGTCAATGACAATAGTAGCTCCAAATGTTACATGCCAAGGCCATGCTTCACCAGTGAATTCTGGGAGAGTAGTAGTAGTGTACAAAAAACAGAAAGTGGAGATGAAATCATGTTTTCTGCTTCAAATGGATTGGAATCTCAGGAAGCAGATTTTTCCTATCAAAATCCTGATTTGACTCGCCATTTGAGTCTGCCCAGCTCTTGTACTAAAATGGCATCAGTAGACAAGTTCCTTCAAATTCAAGGATCTGTTCCTTGTAAAATTCGAGCAAAAAGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGTGAGAAGAACACGGATTAGTGAAAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGATCTGCAGGAACAAGTTAAGATACTCATAGATTGCAGGGAAAAATGTAAATGTACAAGTAATGAAAAGCAACACTCTAGACCCTGTACCTGA 1146 0.4136 MSVMHSPVLKYSDGELRRNEEMDSSIGHPQQHCHQHNSGLIQRYRSAPSSLLASLVDNNINEEGFTSSEMLIWSNSEEYGYGGKPVKQEAGESGTQQQSGYSYGGCGSQLVYQSQQIQCLPNSFYTSSMASQNSTQSKMGIRNCSNLIRQKSSPAGFFSNENALRGVGSFKAGDVSNGQATGTASSSCLKWMPQIAENGNESLEANRNLVNDNSSSKCYMPRPCFTSEFWESSSSVQKTESGDEIMFSASNGLESQEADFSYQNPDLTRHLSLPSSCTKMASVDKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVKILIDCREKCKCTSNEKQHSRPCT. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06890 381 CDD bHLH_AtbHLH_like 308 360 IPR045239 -
Seca3g06890 381 Pfam Helix-loop-helix DNA-binding domain 309 354 IPR011598 GO:0046983
Seca3g06890 381 SMART finulus 309 359 IPR011598 GO:0046983
Seca3g06890 381 Gene3D - 305 377 IPR036638 GO:0046983
Seca3g06890 381 FunFam Transcription factor bHLH130 family 304 373 - -
Seca3g06890 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 369 IPR036638 GO:0046983
Seca3g06890 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 353 IPR011598 GO:0046983
Seca3g06890 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06890 Seca-Chr3 156697671 156700879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06890 32 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 38.441 3.46e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g06890 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06890 - - gmx:100812802 495.738