Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06885 ATGGTTCGCTCCAATGGCGTCAGGTTCATCCGATCTCTGCCCGCAAAACTCCTCCATGACGCCAACAAATCCATATATGAAGGAGTGTTCCAAAGGGGTTATAGGACATTAAATTCAGGACTTTGTTATTCTTCCCGAGTTATCGGAAGTTTTTCGTCAAATGTTGGAGATGGTGTTAATTTGAAAAACTGGATGCCAGCAAAGACATATTGGGGAGCATCTAGGTCGATACATGGCTCGGCATCTTTGGCAAGAGACTATTATGACGTGCTTGGTGTGAGTAGGAATGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGTCAGCAGTATGATCAGGTTGGGCATGATGCTTATGTAAACCAACAAAGCACTGGTTTTGGAGGCAGCAGTGGCTTTAATCCGTTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTTTTTCATCAGAATATTGGTGGGGAGGATGTCAAGACTTTCATTGAACTATCCTTTATGGAAGCTGTCCAAGGATGCACCAAAACTATTACATTTCAAACAGATGTGCTTTGTAACACTTGTGGTGGGAGTGGGGTTCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGATCAGGAGTGACATTTGTACAAGCTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGCAAGGGAACTGGCAAAATTGTATTGAATTTCTGCAAGTCATGCAGGGGTGCGAAGGTTATCAAAGGAACAAAGTCGGTCAAGTTGGATATTATGCCTGGGATGGACAACAATGAAACCATAAAGGTTTACAGGAGTGGTGGTGCAGATCCTGATGGAGATCACCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTGACATTCATGTAGATACTGTTTTAAGTATCACTCAGGTAATGTTTCATAATGAAGAAAATCTTGAGCTATGTCTGGTTGAGTTTTTAAGGTTTCAATTAACCTATATCTGCATTTTATTAGTAGGGTTAGTTTATAATTCTTGGGAAGCAAATTGGTTGAATGCCTTGATATAA 1191 0.4123 MVRSNGVRFIRSLPAKLLHDANKSIYEGVFQRGYRTLNSGLCYSSRVIGSFSSNVGDGVNLKNWMPAKTYWGASRSIHGSASLARDYYDVLGVSRNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDAYVNQQSTGFGGSSGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTITFQTDVLCNTCGGSGVPPGTRPETCKRCKGSGVTFVQAGIFRMESTCGTCKGTGKIVLNFCKSCRGAKVIKGTKSVKLDIMPGMDNNETIKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSDIHVDTVLSITQVMFHNEENLELCLVEFLRFQLTYICILLVGLVYNSWEANWLNALI. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06885 396 Pfam DnaJ C terminal domain 198 355 IPR002939 -
Seca3g06885 396 SUPERFAMILY Chaperone J-domain 85 187 IPR036869 -
Seca3g06885 396 ProSitePatterns Nt-dnaJ domain signature. 128 147 IPR018253 -
Seca3g06885 396 CDD DnaJ 86 140 IPR001623 -
Seca3g06885 396 FunFam Chaperone protein dnaJ GFA2, mitochondrial 83 194 - -
Seca3g06885 396 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 52 354 - -
Seca3g06885 396 Pfam DnaJ domain 86 148 IPR001623 -
Seca3g06885 396 PRINTS DnaJ domain signature 143 162 IPR001623 -
Seca3g06885 396 PRINTS DnaJ domain signature 88 106 IPR001623 -
Seca3g06885 396 PRINTS DnaJ domain signature 123 143 IPR001623 -
Seca3g06885 396 PRINTS DnaJ domain signature 106 121 IPR001623 -
Seca3g06885 396 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 331 IPR008971 GO:0006457|GO:0051082
Seca3g06885 396 Gene3D - 195 324 - -
Seca3g06885 396 ProSiteProfiles dnaJ domain profile. 86 151 IPR001623 -
Seca3g06885 396 FunFam Molecular chaperone DnaJ 214 287 - -
Seca3g06885 396 CDD DnaJ_zf 222 282 IPR001305 GO:0031072|GO:0051082
Seca3g06885 396 Gene3D - 222 282 - -
Seca3g06885 396 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 284 IPR036410 -
Seca3g06885 396 CDD DnaJ_C 193 351 - -
Seca3g06885 396 Gene3D DnaJ domain 83 194 IPR036869 -
Seca3g06885 396 ProSiteProfiles Zinc finger CR-type profile. 209 287 IPR001305 GO:0031072|GO:0051082
Seca3g06885 396 Pfam DnaJ central domain 222 282 IPR001305 GO:0031072|GO:0051082
Seca3g06885 396 SMART dnaj_3 85 143 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06885 Seca-Chr3 156520786 156527366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06885 80 148 C2H2 Transcription Factor Family AT1G74250 41.892 1.33e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06885 K03686 - gmx:100815834 621.698