Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06881 ATGGCTGCTCTGCACTCTTCTCTCTTCTCACAACCCAATTTCCTTTCCCTAACTACCCCATCCACTCACGCCGCGTCCAACTTGAGACTCACAACCACCCACTTACAACCCCTTCTCAAGTTGATGCCTTCCCTCACCGTTGGAACTCCCACTACGACACGCCGTTTTCGTGCGGTGGCTGAACAAGCTACGGTTACCTCGTCCGACCCCAAATCCGAGGCTGCCAGGAGGCTCTACGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTTGCAAAGATTGTGGAAGAGCATGGTGCTGTTGAGAAAGCAGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGTTTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCAGCAATCGAGAAACTTAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTAAATATAACTGAAAAGCCTCTATCAACAGTAGATTTGAGTATACTCCAGGTCCAGGCTGAGGAATCGGAATATGTTGACGGCCCCCACAAGGTTTATGTGGGAAATTTGGCTAAGACAGTAACAACTGATACTCTTAAAAACTTTTTCTCTGAAAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGAGTTCCTGGGACCTCAAAATCCAGTGGGTTTGGTTTTGTTACTTTTTCTTCAGATGAGGATGTAGAAGCTGCAATATCATCTTTCAACAATGCTTTATTAGAAGGGCAGGAAATTCGTGTGAATAAGGCGTAG 765 0.4549 MAALHSSLFSQPNFLSLTTPSTHAASNLRLTTTHLQPLLKLMPSLTVGTPTTTRRFRAVAEQATVTSSDPKSEAARRLYVGNIPRTVTNDELAKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTQIGGREIKVNITEKPLSTVDLSILQVQAEESEYVDGPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQEIRVNKA. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06881 254 FunFam 30S ribosomal protein 2, chloroplastic 55 156 - -
Seca3g06881 254 Gene3D - 52 158 IPR012677 -
Seca3g06881 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Seca3g06881 254 CDD RRM1_PSRP2_like 77 156 - -
Seca3g06881 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Seca3g06881 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 250 IPR000504 GO:0003723
Seca3g06881 254 SMART rrm1_1 179 252 IPR000504 GO:0003723
Seca3g06881 254 SMART rrm1_1 77 150 IPR000504 GO:0003723
Seca3g06881 254 Gene3D - 164 254 IPR012677 -
Seca3g06881 254 SUPERFAMILY RNA-binding domain, RBD 66 154 IPR035979 GO:0003676
Seca3g06881 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 254 IPR000504 GO:0003723
Seca3g06881 254 PANTHER OS02G0815200 PROTEIN 22 253 - -
Seca3g06881 254 SMART rrm2_1 179 252 IPR003954 GO:0003676
Seca3g06881 254 SMART rrm2_1 77 150 IPR003954 GO:0003676
Seca3g06881 254 SUPERFAMILY RNA-binding domain, RBD 172 254 IPR035979 GO:0003676
Seca3g06881 254 FunFam 30S ribosomal protein 2, chloroplastic 165 254 - -
Seca3g06881 254 CDD RRM2_PSRP2 177 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06881 Seca-Chr3 156378853 156382693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06881 78 254 Eukaryotic Initiation Factors Gene Family AT2G23350 33.889 2.41e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06881 K13126 - gmx:100811197 358.992