Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06871 ATGGCTGGTGTTTACGATGAAGTTGGAAGCATTTTCACTGGCAGGCAGAATTGGAAACTGAAAGTGAGGGTGGTACGTGTATGGGAGATGTTCCCAATTGTTGAACCTTCCAGAACTTTTTCTATTGAGATGGTTTTGGTTGATCAAAAGAAGTTTAATGGAGGTATAATCAAAGGAGAGGTGTACAAGATGCACTTCTTTGGAGTTGTTAGAAACCTAGGTTCATATAGAGCCACGAAACACGATTATAAACTCATATTCAATGCAAAAACAAAGATAAGTCGGTGTGATTCTTGCAGTGTCCCATTACATGGTCTATCGCTCATGAATTCTGAGGAAATCATGAACACGCATGGCCAGAGTGATTATCTTGTGGATGTAATTGGCATATTAACTGCAATTTCTGCGGAGAAACATTCTTTCCTTGATAGGCGCATGACAAGGGTGATGCAGTTAGAGCTGATAGATGATAAGGGAAAAGTTCATTGTGCAATGTTTGATAGTTATGTTGATATGGTTGGCGATTTATTGTGTGGTATGGGCCCTGAGTTTCCTGTGATGGTTGTCATGTTTTCCAAGGTCGAACTTTACAAAGGATTTTTCCTACAAAATGTTCTTAACACAACTAAGATCCTATGCAATCCTAATATTGCTGAAGTTGAGGAGTTTCGGTTGCCCTCCATGCATGGTATAAACATTCTTGCACCCATGGGTGTTATCCAGGATGATTACCAAAGCAGTGCTCCGAAGGATGAGTTTCTAAATGGACACCCACGGAAGACCATCAGACAACTACATGAGACTGAGGAGGTTATTCAGGATGGCTGCTTCATTGTGCTTGCATCGATAGTTAGTGTCTTGAATGAAGGTAACTGGTGGTATGCGGCTTGCAAGTGTCATCGTGCAGTTGCAATGGACGGTGATAGATACTATTCCTCATCACGTGGCATGCACGTCAAAGAAGTGTCCTCCAGGTACAAGTTGAAGGTTGAGGTTTATGACGAAGATGATACAACTGCTTTTGTTTTGTTCGATGCGGATGCGGAGATGTTATTTGATGATAATTGTGCCGAATTATTGGGTCGCATTAAGGATAAACATACTAATGATGTGCCTTCAGAGTTTAACGAATTGGCGGGGAGGGAGGTTCTATTCAAGGTTGAAAAACCTGCAGATTATGCTTTTAAATTTGATGATTCGTTTAGAGTTAAGAGAATATGCACTGACAAATGCATCATTGACATGCTTAAGAATGCTGATAACATTGCTACTCCCGATATAAGGGTTGCTCCTGTTCCTTTCCTCAGTTTGGATGATATTGGAGAGGGAAGTCATGCAGCAATTGTTGTTGTTAGTCAGGTTTCAATTGACACAAGTGTTGAATTGAGCATTATACCCTTGGAGGATGTCATAACGGAATCAGTTGGATGTTATGCCTCCAACGAATCCACTACTAGCGATTATGCTAAAGTGCATTATAAAGGAAAGAAAAAGTCAAGTCAAAAGGATACAATGTCTTGA 1521 0.4057 MAGVYDEVGSIFTGRQNWKLKVRVVRVWEMFPIVEPSRTFSIEMVLVDQKKFNGGIIKGEVYKMHFFGVVRNLGSYRATKHDYKLIFNAKTKISRCDSCSVPLHGLSLMNSEEIMNTHGQSDYLVDVIGILTAISAEKHSFLDRRMTRVMQLELIDDKGKVHCAMFDSYVDMVGDLLCGMGPEFPVMVVMFSKVELYKGFFLQNVLNTTKILCNPNIAEVEEFRLPSMHGINILAPMGVIQDDYQSSAPKDEFLNGHPRKTIRQLHETEEVIQDGCFIVLASIVSVLNEGNWWYAACKCHRAVAMDGDRYYSSSRGMHVKEVSSRYKLKVEVYDEDDTTAFVLFDADAEMLFDDNCAELLGRIKDKHTNDVPSEFNELAGREVLFKVEKPADYAFKFDDSFRVKRICTDKCIIDMLKNADNIATPDIRVAPVPFLSLDDIGEGSHAAIVVVSQVSIDTSVELSIIPLEDVITESVGCYASNESTTSDYAKVHYKGKKKSSQKDTMS. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06871 506 Gene3D - 248 418 IPR012340 -
Seca3g06871 506 CDD RPA1_DBD_C 260 387 IPR047192 -
Seca3g06871 506 Gene3D - 100 227 IPR012340 -
Seca3g06871 506 PANTHER OS03G0429900 PROTEIN 207 388 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g06871 506 Pfam Replication factor-A C terminal domain 279 405 IPR013955 -
Seca3g06871 506 SUPERFAMILY Nucleic acid-binding proteins 7 98 IPR012340 -
Seca3g06871 506 SUPERFAMILY Nucleic acid-binding proteins 257 419 IPR012340 -
Seca3g06871 506 SUPERFAMILY Nucleic acid-binding proteins 109 224 IPR012340 -
Seca3g06871 506 CDD RPA1_DBD_A_like 19 93 - -
Seca3g06871 506 Gene3D - 7 98 IPR012340 -
Seca3g06871 506 Pfam Domain of unknown function DUF223 54 110 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06871 Seca-Chr3 155548469 155550938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06871 10 404 Core DNA Replication Machinery Family AT4G19130 21.429 1.32e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06871 - - lja:Lj6g3v0884310.1 350.517