Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06860 ATGGATGAACATTCTGATGCAGAAGTTGATGTTGATGAATACAGAATAGACAATAAGTCAGATATAAAGCGGGTACAGTTCTTGATCTTAACTATTGAAGAGTTTAAATTGTACCACTTCTTCAGTTGGCTTGTGGCATTTGAATTCTACAATAAGTATGCACTGAAAAAGGGATTTGCTGATCGAAGATGGAATGTTCTAAAAAACAAAAGAGGAGAGGTTACCCAGCAAGAATTTGTGTGTTACAAGGAGGGATTTCGTGACAAGAAACACTTAGAGAGGACCGGTCGAAAGCGAGAGACGAGAGCAATGACAGGGTGTGGTTGTCCAGCTATTTGTTGTGTGCGTCTCGATCGAGAAAGTGGTCGATGGAGGGTGAAAACATTTAATGATGTTCATAGTCATGAGTTGTTAGGTGAAAAGTATGTACGAATGTTGCCCGCACACAGAAAGATGAATGATTGTGACGTAATGCAAATGAATAGTATGAGGGAGGCAGGTATTGGTGTAACACAAATATATGGGTTAGCAGCTAAGCACTGTGGGGGTTACAATAGGATTGGTTATAGGAAGAGAGATATGTGCAATGAAATAGTAAGAGAAAGACGTATCAAAGTTAGTGATGCTAGATCCGCTTTATCCTACTTGAGTGGGGTTTTTGGAGATGTTGTTGCATTTGATGCAACGTATCGCCGAAACAAATACATGTGTCCGTTTGTTGTCTTTGCGGGTGTCAACAATCATAACCAAACAATTGTTTTTGGTTGTGGGCTGGTGGCTAATGAGACAGAGGAGACATACGTTTGGCTACTAAAACAATTCTTGGATGCCATGAAAGGTACCTTTAGGCGGAAGTGGGAAGAGATGGTTGGTGAATTTGGTTTGGAGGGTAATGAATGGGTTCGAGAATTGTATGAAAAGAGGAAAATGTGGGCAACTGCGCACATTCGTGGCAACTTCTTTGCGGGTTTCAGGACAACCTCAAGATGTGAAGGGCTTAATTCTCAAATTGGCAGGTATGTTCATGTTAGAAATAATTTGACCGATTTTTTGAAACAATTCAGTAGGTATATGGTCTACACTAGGCAAAGAGAGCTTGAGGCGGACTTTGAGTCAATTGTTGGGCATCCTGTGTTGTTGACACCTCTAGAAGATATAGAGCGCTTTGCAGCTAGGGTATACACTCGTAAGGTGTTTTTTATGTTTCGGACTGTCCTTAATAGAGCATCGAAGTTAAAGGTTTTGTCGTTCATGGAAACACCTGCATCTGTTGTGTACATTGTTGGCAAAAGATTAAGTAATGTGCAGGTATGGAATGTTTCATTGGTTTCATCAACATCCCAAGTGAAGTGCACCTGTCAGAGGATGGAGTCTAATGGAATCCCGTGTGAACACATAATCTCAGTTTTGCATTATTTGGATGTGTCGGAGTTGCCCGATTGTCTTGTATTGCCTAGGTGGACCAAATATGCAAAGCAATGTGTTGAAGGAAGTAATGGTGAAGGTGCTACAATGACAGATGCAAATTTGAGGAACGGTATGGTGGCTCTATTATTTGATTGCCATGAAATGTGTAGACTTGCAGGCAGAAATATTGACAAGTTAAATACAACACAAGAACTTGTTAGAAAACATGTGATGACTTTGAAGGAAGGTTCGGATGCAGAAAGTTCAGATGATGGAAATGAAACTGATGCTGAATATGTGAATGTTCGGGATCCTGTGCGTGTGAGGACTAAAGGGTGTGGTACGAGACAACAAGCATCAAACAGAAGAGGTGATAGGAGGTCTAATTGTTGCAGTGTATGCCAGCGGCCAGGGCATAATAAGACGACGTGCCCAGAACGAGCAGAACCATCCAATGGTCGCAGGAGTAGAGAGGCAAATGACAATGATACTACAGACGTCCCAATGACGGATGTAGGTGGTGGAAACGGCAGAGGACGGGAGCATTGGCAGAACATTTGTAAAGCTGGTGTTGAATACATATGA 1992 0.4177 MDEHSDAEVDVDEYRIDNKSDIKRVQFLILTIEEFKLYHFFSWLVAFEFYNKYALKKGFADRRWNVLKNKRGEVTQQEFVCYKEGFRDKKHLERTGRKRETRAMTGCGCPAICCVRLDRESGRWRVKTFNDVHSHELLGEKYVRMLPAHRKMNDCDVMQMNSMREAGIGVTQIYGLAAKHCGGYNRIGYRKRDMCNEIVRERRIKVSDARSALSYLSGVFGDVVAFDATYRRNKYMCPFVVFAGVNNHNQTIVFGCGLVANETEETYVWLLKQFLDAMKGTFRRKWEEMVGEFGLEGNEWVRELYEKRKMWATAHIRGNFFAGFRTTSRCEGLNSQIGRYVHVRNNLTDFLKQFSRYMVYTRQRELEADFESIVGHPVLLTPLEDIERFAARVYTRKVFFMFRTVLNRASKLKVLSFMETPASVVYIVGKRLSNVQVWNVSLVSSTSQVKCTCQRMESNGIPCEHIISVLHYLDVSELPDCLVLPRWTKYAKQCVEGSNGEGATMTDANLRNGMVALLFDCHEMCRLAGRNIDKLNTTQELVRKHVMTLKEGSDAESSDDGNETDAEYVNVRDPVRVRTKGCGTRQQASNRRGDRRSNCCSVCQRPGHNKTTCPERAEPSNGRRSREANDNDTTDVPMTDVGGGNGRGREHWQNICKAGVEYI. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06860 663 MobiDBLite consensus disorder prediction 579 650 - -
Seca3g06860 663 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 280 IPR031052 GO:0006355
Seca3g06860 663 Pfam MULE transposase domain 223 279 IPR018289 -
Seca3g06860 663 ProSiteProfiles Zinc finger SWIM-type profile. 438 474 IPR007527 GO:0008270
Seca3g06860 663 SMART 26again6 449 476 IPR006564 GO:0008270
Seca3g06860 663 MobiDBLite consensus disorder prediction 582 616 - -
Seca3g06860 663 Pfam FAR1 DNA-binding domain 48 138 IPR004330 -
Seca3g06860 663 MobiDBLite consensus disorder prediction 617 633 - -
Seca3g06860 663 Pfam SWIM zinc finger 435 473 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06860 Seca-Chr3 155317308 155319774 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g06860 FAR1 8.5e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06860 - - tpra:123913749 467.233