Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06856 ATGTGGAGATTTAAGCCATTCATGCACAAAGAGCCAACTGGTCTTGAAGGCCGTTCTATAGACGTTGGAAATCTTAAAATACATGTCCACAAGGCCATTGCTGAAGGAGGGTTCTCGTGTGTCTACTTAGCTCGTGATGCTGTACATATGTCAAAACAATATGCTTTGAAGCACATGATATGCAATGATGAAGAATCACTTGGATTAGTAAAGAAGGAGATATCTGTGATGAAGTTGCTGGTAGGACATCCGAATGTCGTCACACTTCATGCACATACAATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTCATGGAATTTTGTGACAAGTCTCTGGTCAATGTGCTGGAGAGCCGGGGAGTTGGTTATTTTGATGAGAAACAGGTTCTTTTAATCTTTAGGGATGTTTGTAACGCAGTTTTCTCTATGCACTGCCAGTCCCCACCTATTGCTCACCGAGACTTGAAAGCGGAGAATCTTTTATTAGGTTCAGATGGTTTGTGGAAGTTGTGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCATACAGAGCACCAGAGATGTGGGATCTGTTCCTAAGAGAAGTCATTAATGAGAAAGTTGATATATGGGCACTTGGTTGTCTCCTTTTTCGTATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCAGATTTACCTAAATACAGTTCATCTGTCACGGACTTAATCAGAGACATGCTTCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAATTTAGGTTGGTCATAG 918 0.4194 MWRFKPFMHKEPTGLEGRSIDVGNLKIHVHKAIAEGGFSCVYLARDAVHMSKQYALKHMICNDEESLGLVKKEISVMKLLVGHPNVVTLHAHTIFDMGRTKEAFLVMEFCDKSLVNVLESRGVGYFDEKQVLLIFRDVCNAVFSMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYSSSVTDLIRDMLQARPDDRPDITQASALLDWPFISINLGWS. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06856 305 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 301 - -
Seca3g06856 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Seca3g06856 305 ProSiteProfiles Protein kinase domain profile. 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06856 305 Gene3D Transferase(Phosphotransferase) domain 1 11 296 - -
Seca3g06856 305 Pfam Protein kinase domain 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06856 305 CDD STKc_GAK_like 26 288 - -
Seca3g06856 305 PANTHER SERINE/THREONINE PROTEIN KINASE 1 291 - -
Seca3g06856 305 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Seca3g06856 305 SMART serkin_6 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06856 Seca-Chr3 155277935 155279818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06856 26 288 Miscellaneous Gene Families AT2G34180 29.670 1.14e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Seca3g06856 Pkinase 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06856 K08853 - gmx:100808507 565.844