Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06852 ATGGAAAACCACCAAAACAATCCAGACCCAGACCTAGAGAAGCAACACCAGGACTGGGGCACGTGGGAAGAGCTCTTGCTAGCGTGCGCCGTCAACCGCCATGGCTTCAAAGACTGGGACACCGTCGCTATGGAGGTCCAGTCCCGCACTAACCGCCCCAACCTCCTCGCCACCGCACACAACTGCGAGCAAAAATTTCACGATCTTAACCGCCGATTCACCGACCAATGCAACGACGTCGTTTCGCCGCCCCGCCAGAACGGTGCCTCCGTGAGCGTTAACTCCGATCACGTCCCTTGGCTCGAAGAATTGCGTAAACTCCGCGTCGCCGAACTCCGGCGAGAGGTCCAACGCCATGACGTCTCCATTCTGTCCCTGCAACTGCAGGTTAAGAGGTTGGAAGAGGAAAAAGCTAAAGAGAATGACGGAAAAGATGACGAACCCCCAGATCTGGGGGTTCGCTGCGAGCAGCGGCCGGAAAATGACAAAACCGGCGGAGAACTGGAAGAGGCTGGACCGGCCAATTCTGAACCGGAGATTCGCCGGCTCGATGAGAGCACCACTAACACTGATAAGCTTCCACCAACAACGGGTGACGAATCGGACCGGGAGAATCAGTCAGTAAATGAGTCTAACTCGACCGGTTCGAGGTTCGAGGTAGCGAAAACCGGAGAGGGTAACGCTAAGTTGGGGCTTGGACCGCCCCCGGTTCAAGCCGGTCCAAAAGAACCGGATTCGGTCGGAAGGAAGAAAAAATCGGTTGGGGAAGAATCGAATAACGGAAGTTACGATACCGAGGCTAAAGTCCCAACGTGCGAGTCGGTGCCTCCGAGTGAGGAGAGAAAGGTGGACGAGGACTCCTCCGAGTTGCACGACTCAGTGGCTCACTCGGGGGAGGGAGGGACAAGAGAGAGCAGCGAGGTGCAAAGCTCTGCGAGCTTGACGAGGAAGAGGCAGACGCGGCGAAGAAAGGAGGTTTCCAGCGCTGACGGTGGTGGTGAGGTGGCGCCGGAGAACGACGACGTTATGAAATCAGAACCGTTGGCTGGCATATTAGATATGATCAAAGGACATGAAAACATCTCCTTGTTGCGCCGTCTCGAAATCCAGCAGTACTCGGATAGATACAAAGACGTGGTGAGACAGCATGTGGACTTGGAAACCATACAATTGAGACTCCAAAAGGGTTACTATTCCTCATGCACGAGCTCTTTCTTCCGCGACCTCCTCCTCCTCTTCACCAACGCCACCGTGTTCTTCCCCCTAGACTCCGCGGAATCAAGGGCGGCGCGGCACCTGCACCGCATAATCGTCACTGAGATGAAAAGCCATGGCCAAACACAATCCGATCCTATCCCCCAAAAGAACGATTCACTCCCTCCAAACGCACCACTGGCCAATCCAGATTCTTCTCTCCTCTCCAAGCACAAAGCCTCTGCTCCTATACTAGTTTGCCGCAAACGCAGTTCAATCTCAGCCAAACCTTCCTCAGCCACTTTTGGCCAAAAGGGTGACCAACAACCCGTCATCAATGACAAGAAGGAAAGGCTACCTTCTGATGCAAAACCACCCTTGAAACCTTCTTCTTCTGAGACAGACGAAGATGAACCTCCCAAGGCCAAGGAAAAGCCTGTCACTGGAGCGAGAAGCTTGAGGAGAAGCAACAAGAATCTCAACAGCAACCCTGGCAGTAAGAAATTACCTTCTAACTCCACTCCTAAAGCAGGGTCCTCGGTGAACAAGCCTAGTGAGACCGTGAAACTGGACAAGAGCAAAGCAGATGTGGTGCCGGACAAGAAGAGGAATGCTGCTGCTGATTTCTTGAAACGGATAAAGCGAAACACTTCAGGAGAGGCACTGAGGAGTGGTGGTGGTGGTAGTAGTGGTGGAGGAGGAGCAGGAGGGGGCGGAGGAGGAAGTAGCAGCAGCAGCAGGGGTGGTGGAGGTGGTGTTAGTGTGAAAGAGCAGAAGAAAATGGTGAGTAGTGGAAAGGGGGACAAAGGGAAAGAAAGGCCTTCAAGGCACAACAGTGGAGGAGGGTCAGGGGATAAAAGAAACAAGAATATTGAGAACAACTCTCAGTCCAAGAGGAGTGTTGGGAGACCTCCAAAGAAGGCTGCAGAGACCAATACAGGCAGTGCAAAGCGTGGTAGGGAAAGTAGTGCAAGCGCTGGCAAGGATAAACGACCTAAGAAGCGATCTAAGAAATGA 2211 0.5337 MENHQNNPDPDLEKQHQDWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPNLLATAHNCEQKFHDLNRRFTDQCNDVVSPPRQNGASVSVNSDHVPWLEELRKLRVAELRREVQRHDVSILSLQLQVKRLEEEKAKENDGKDDEPPDLGVRCEQRPENDKTGGELEEAGPANSEPEIRRLDESTTNTDKLPPTTGDESDRENQSVNESNSTGSRFEVAKTGEGNAKLGLGPPPVQAGPKEPDSVGRKKKSVGEESNNGSYDTEAKVPTCESVPPSEERKVDEDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRQTRRRKEVSSADGGGEVAPENDDVMKSEPLAGILDMIKGHENISLLRRLEIQQYSDRYKDVVRQHVDLETIQLRLQKGYYSSCTSSFFRDLLLLFTNATVFFPLDSAESRAARHLHRIIVTEMKSHGQTQSDPIPQKNDSLPPNAPLANPDSSLLSKHKASAPILVCRKRSSISAKPSSATFGQKGDQQPVINDKKERLPSDAKPPLKPSSSETDEDEPPKAKEKPVTGARSLRRSNKNLNSNPGSKKLPSNSTPKAGSSVNKPSETVKLDKSKADVVPDKKRNAAADFLKRIKRNTSGEALRSGGGGSSGGGGAGGGGGGSSSSSRGGGGGVSVKEQKKMVSSGKGDKGKERPSRHNSGGGSGDKRNKNIENNSQSKRSVGRPPKKAAETNTGSAKRGRESSASAGKDKRPKKRSKK. 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06852 736 MobiDBLite consensus disorder prediction 682 699 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 508 549 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 174 188 - -
Seca3g06852 736 ProSiteProfiles Bromodomain profile. 376 427 IPR001487 GO:0005515
Seca3g06852 736 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 2 736 - -
Seca3g06852 736 Gene3D - 345 449 IPR036427 GO:0005515
Seca3g06852 736 Coils Coil 116 143 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 299 315 - -
Seca3g06852 736 Pfam Myb-like DNA-binding domain 17 50 IPR001005 -
Seca3g06852 736 SUPERFAMILY Bromodomain 349 453 IPR036427 GO:0005515
Seca3g06852 736 CDD Bromodomain 351 441 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 135 342 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 135 167 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 442 472 - -
Seca3g06852 736 Pfam Bromodomain 352 431 IPR001487 GO:0005515
Seca3g06852 736 SMART sant 15 72 IPR001005 -
Seca3g06852 736 MobiDBLite consensus disorder prediction 275 298 - -
Seca3g06852 736 CDD SANT 19 50 IPR001005 -
Seca3g06852 736 MobiDBLite consensus disorder prediction 659 681 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 585 616 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 493 736 - -
Seca3g06852 736 MobiDBLite consensus disorder prediction 550 584 - -
Seca3g06852 736 SMART bromo_6 341 446 IPR001487 GO:0005515
Seca3g06852 736 SUPERFAMILY Homeodomain-like 12 51 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06852 Seca-Chr3 155102545 155107422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g06852 Bromodomain 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06852 - - gmx:100779988 996.882