Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06841 ATGGAGCTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTAGTGGCTCATGAAGCCTCAGCTTCTTCCAAGGAACTTGGCTTAGGCTTCAACACCACCTTATCAATTGGTTCAATCATCACTAGACAAAGAGATCCACAAGAAGAAGAAGAAGAAGAAAAACCAAAGAAGGACAATAACCATGAAGCCACAAATGAATATCCTAGTCCTCCTTCTTCTTCCAATAACCCTGTCCCACATCAGCTTGATCTTCTTCCTCAGCTCTCCTTCCCATGGCTTCCTACTGAAAACGGTAAAGACCCAATTTTCAATACCTTTCCACATGCAGGGAGTTTATCAAAGGGGTTGGACGTGAACGTGGTGCCGCCGGCGCCTGCGGTGGCGGAGGATGAGGCGGAGGAAGGAGCGGCGCTGTCATCATCCCCTAACAGCGCAGCATCTTCTTTTCAGATGGATCTGTGCATATACAGCAGAGGAGGTGGAGGGAGTTTGAGTGGTTCAGGAGGGAAGAGGGATTCTGATGGTGAGGCTTATGATCAAAGGGCTTCTTCAAGAGCAAGTGATGAAGATGAAAACGGTGGTGGTAGCACCAGGAAGAAGCTAAGGCTCTCCAAGGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAACACAATACTCTTAACCCTAAACAAAAACTTGCACTTGCAAAACAACTCAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAATTGAAGCAGACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACACTGACGGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTTTACATGCAATTACCAGCTACTACCTTGACCATGTGCCCTTCTTGTGAGCGTGTCGCCACTAATTCCACCTCCACTACTACTCCTAATGCCACCAGCAATGTTAATAATACCTCAGCCACTGCTAATAATGACTCCACTTCTAAAACCATTGGATTCCCCTTTGGAAAACCCAGATTTCATCCATTCGCTCACACCAGTCCACAACAGCATCTTGAATTGAATTGA 1104 0.4583 MELGLSLGDSSRPLVAHEASASSKELGLGFNTTLSIGSIITRQRDPQEEEEEEKPKKDNNHEATNEYPSPPSSSNNPVPHQLDLLPQLSFPWLPTENGKDPIFNTFPHAGSLSKGLDVNVVPPAPAVAEDEAEEGAALSSSPNSAASSFQMDLCIYSRGGGGSLSGSGGKRDSDGEAYDQRASSRASDEDENGGGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTTTPNATSNVNNTSATANNDSTSKTIGFPFGKPRFHPFAHTSPQQHLELN. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06841 367 MobiDBLite consensus disorder prediction 64 82 - -
Seca3g06841 367 Pfam HD-ZIP protein N terminus 63 149 IPR006712 GO:0005634
Seca3g06841 367 Coils Coil 267 290 - -
Seca3g06841 367 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Seca3g06841 367 Gene3D - 202 252 - -
Seca3g06841 367 MobiDBLite consensus disorder prediction 172 202 - -
Seca3g06841 367 Pfam Homeodomain 198 252 IPR001356 GO:0003677
Seca3g06841 367 MobiDBLite consensus disorder prediction 43 63 - -
Seca3g06841 367 MobiDBLite consensus disorder prediction 161 202 - -
Seca3g06841 367 SMART HOX_1 196 258 IPR001356 GO:0003677
Seca3g06841 367 MobiDBLite consensus disorder prediction 312 343 - -
Seca3g06841 367 SMART halz 254 297 IPR003106 GO:0006355|GO:0043565
Seca3g06841 367 FunFam Homeobox-leucine zipper protein 18 182 259 - -
Seca3g06841 367 MobiDBLite consensus disorder prediction 1 83 - -
Seca3g06841 367 ProSiteProfiles 'Homeobox' domain profile. 194 254 IPR001356 GO:0003677
Seca3g06841 367 MobiDBLite consensus disorder prediction 312 367 - -
Seca3g06841 367 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 333 - -
Seca3g06841 367 CDD homeodomain 198 255 IPR001356 GO:0003677
Seca3g06841 367 SUPERFAMILY Homeodomain-like 183 255 IPR009057 -
Seca3g06841 367 MobiDBLite consensus disorder prediction 25 42 - -
Seca3g06841 367 Pfam Homeobox associated leucine zipper 254 288 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06841 Seca-Chr3 154291925 154293721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06841 74 317 Homeobox Transcription Factor Family AT5G47370 56.911 3.37e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g06841 HD-ZIP_N 4.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06841 K09338 - gmx:100778742 432.95