Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06838 ATGGAGCTTGATTTGAATCAGGAGCCTTTAGATCAAATAGAAGAACGTATTAGACGCCTTGAAGCAGTAATTTTCAGGGCTAGACAGCGCCAGAGGTGGCGACAGGGTCACACTCCAATTCAGATAAGTAACTTTGCAGGAGAATTGGTAACAACAGATAATAATGTTCAAGATGAAGGGACGGTGCACCATGAAGAGGCTGGCAATGATGTTGAAGGAGGGATAGTGAGTGGTGAGGAATTGGGCAAAAGGAAGACTTCCTATTTAGTTGCTAAAGCATTGGGGATGGAATCATATACCAATAATACAGATGGCTGTGCTGGAAACATATTTGATTGTAATATATGCTTGAACATGGCAAGAGATCCTGTTTTGACCTGCTGTGGTCACTTGTTCTGCTGGCCATGCTTCTATAGGTTATCGTATACTTATTCAAATGTGAGGGAATGCCCCGTTTGTGATGAAAAGGTCAATGAAACAAGCATCATCCCTATTTATGGCAATGCATGTGTCAATGGTAGTGGTCACTTGGATTTGAAAGAAACTGGTTTGAGAGTCCCTCCTCGACCCCGTGCACCTAGAATTGAGAGTATTAGGCAGTAG 603 0.4279 MELDLNQEPLDQIEERIRRLEAVIFRARQRQRWRQGHTPIQISNFAGELVTTDNNVQDEGTVHHEEAGNDVEGGIVSGEELGKRKTSYLVAKALGMESYTNNTDGCAGNIFDCNICLNMARDPVLTCCGHLFCWPCFYRLSYTYSNVRECPVCDEKVNETSIIPIYGNACVNGSGHLDLKETGLRVPPRPRAPRIESIRQ. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06838 200 SUPERFAMILY RING/U-box 109 163 - -
Seca3g06838 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 167 IPR013083 -
Seca3g06838 200 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Seca3g06838 200 SMART ring_2 113 153 IPR001841 -
Seca3g06838 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 72 194 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca3g06838 200 Coils Coil 10 30 - -
Seca3g06838 200 Pfam zinc-RING finger domain 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06838 Seca-Chr3 154165838 154167230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06838 94 199 C3H Transcription Factor Family AT3G58030 44.860 2.39e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06838 - - lang:109334311 283.493