Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06816 ATGCAGAGGAACAAGAATTTATCAGAAGAACCTCATAAGACACACCACCACAGTGCTCATAGTTGTGCAAATTCAGGAAATAATTCACCAACTCATCACACAATGGGGAATCAAGCAGGAAAGGATGCCTGCACAACTGAGTATTCAACAAGTGGAGCTGGACATATGGACCATTCAACAAATGGAGCTGGACATATGGACCAGGTGTCTAAAACTGATGCAAAGTTGGCAAGACTGCCAACAGGAACTACAAAGGGAATGTCTACCAATACAAAGACTGCCAATCAAGGCACAGGGAGTGGCACTAGCTCCCGCAGTGAGAATTTAGAGAGCACCAGTGCACCCATTAGGCCACATACTGGTGGTGATGTAAGGTGGGATGCAATTAACATGGTTTCCAAGAGTGGCCCCCTCAATCTTAGCCATTTCAGGCTTCTCAAACGCATTGGTTATGGAGACATTGGAATGGGGGTGATCTTCATTCTCTTCGACAATAGCAACCAAACAAGTGTTTCACTGAAGAAGCTGCAAGAGGTTTTGTTGGCTCTTGAGTACCTGCACAAGCATGGCAGTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAAAGATGAAGGGCATATCATGCTCTCAGATTTTGATTTATCACTTCACTGCTCTGTCAGTCCTACATTAGTCAAGTCTTCACCTACCAATGAAGGCAATGGTGGTGGTGGTGATTCTGGGGGTATGTTGGGTGATGACCAAGCAGTGCAAGGCAATACTCAACCATCAGGCTTTTTCCCTCACATTTTGCCTTCAAAGAACAGAAAGGAAAAATCATATTTTGGCCTATTGCCATTGAGATTCCCAGAAACTCCCCAAATCAGTGCAACAGCTCGTGATCTTATAAAAGGATTGTTGGTGAAAGAACCTCAGAAGAGAACTGGATATAAAAGAGGTGCTACAGAAATAAAACAACACCTATTTTTTGAGGGAGTGAATTGGGCTCTAGTTAGGACTTAG 1008 0.4365 MQRNKNLSEEPHKTHHHSAHSCANSGNNSPTHHTMGNQAGKDACTTEYSTSGAGHMDHSTNGAGHMDQVSKTDAKLARLPTGTTKGMSTNTKTANQGTGSGTSSRSENLESTSAPIRPHTGGDVRWDAINMVSKSGPLNLSHFRLLKRIGYGDIGMGVIFILFDNSNQTSVSLKKLQEVLLALEYLHKHGSVYRDLKPENLLVKDEGHIMLSDFDLSLHCSVSPTLVKSSPTNEGNGGGGDSGGMLGDDQAVQGNTQPSGFFPHILPSKNRKEKSYFGLLPLRFPETPQISATARDLIKGLLVKEPQKRTGYKRGATEIKQHLFFEGVNWALVRT. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06816 335 Gene3D Transferase(Phosphotransferase) domain 1 176 218 - -
Seca3g06816 335 PANTHER FLIPPASE KINASE 1-RELATED 281 334 - -
Seca3g06816 335 MobiDBLite consensus disorder prediction 249 263 - -
Seca3g06816 335 SUPERFAMILY Protein kinase-like (PK-like) 140 332 IPR011009 -
Seca3g06816 335 MobiDBLite consensus disorder prediction 20 67 - -
Seca3g06816 335 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g06816 335 MobiDBLite consensus disorder prediction 1 120 - -
Seca3g06816 335 Gene3D Transferase(Phosphotransferase) domain 1 282 333 - -
Seca3g06816 335 ProSiteProfiles Protein kinase domain profile. 55 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06816 335 MobiDBLite consensus disorder prediction 227 267 - -
Seca3g06816 335 MobiDBLite consensus disorder prediction 82 115 - -
Seca3g06816 335 SMART serkin_6 92 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g06816 335 Pfam Protein kinase domain 176 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06816 Seca-Chr3 153566468 153568372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06816 282 335 AGC Kinase Gene Family AT1G79250 81.481 2.59e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g06816 Pkinase 5.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06816 - - tpra:123893855 162.54