Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06801 ATGGCCACGACGGTAACGGCAACGGCGGCGGAGCAAGAATTAAAAACATACTGGTGCCACGAATGCGACATGAGTGTGGCTTTGACTTGGTCTCCCTCTCCTTCTCCTTCCCCTCTCTTGTGCCCCCATTGTCACTCTCACTTCCTTGAACTCATGGACTCTCCCTTCGACCAAAACGACGCCGAATCGCCTCTCCCTTCCTCCCTCTTCGACGTCGTTTTCCAAGACGCCCTCGCACTTTTCTCACCCCCTTCCTCCACCAAGACTCGCGCTATCACCATCCCTGTAATCTCGGTCACACCCGCACTCCTCTCTAACCTCGACCAAAACGGCGTCGTATTGTGCGCCGTCTGTAAAGATCAAATCGCCGTTGACGCTGAGGCCAAACAGCTCCCATGCGACCATCTCTACCACTCCGATTGCATCACGCCATGGCTCGAGGTTCGTGGCTCCTGCCCCCTCTGCCGGTTCCGCCTCACAGAGGAAGAAGAAGAAGAAGAATACGATGATGGTTCCGCCATCAGGAGGGAGCTCATGGTGAGGCTGTCAGAGTTGACGGAGGATGATTTCTATGGATTGAGGACCACTCTCAATCACATTGTTTCCCGACACGCACTCCATGCGAGGCGAGAGAACGAGAATCGTGCTCCAGTTACTGAACCTGGTGGCGGTGGAGATGGAGGAGAATCTGTTTAG 696 0.5489 MATTVTATAAEQELKTYWCHECDMSVALTWSPSPSPSPLLCPHCHSHFLELMDSPFDQNDAESPLPSSLFDVVFQDALALFSPPSSTKTRAITIPVISVTPALLSNLDQNGVVLCAVCKDQIAVDAEAKQLPCDHLYHSDCITPWLEVRGSCPLCRFRLTEEEEEEEYDDGSAIRRELMVRLSELTEDDFYGLRTTLNHIVSRHALHARRENENRAPVTEPGGGGDGGESV. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06801 231 SUPERFAMILY RING/U-box 109 161 - -
Seca3g06801 231 SMART ring_2 115 155 IPR001841 -
Seca3g06801 231 MobiDBLite consensus disorder prediction 208 231 - -
Seca3g06801 231 Pfam Ring finger domain 115 156 IPR001841 -
Seca3g06801 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 174 IPR013083 -
Seca3g06801 231 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Seca3g06801 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 159 - -
Seca3g06801 231 Pfam zinc-ribbon 16 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06801 Seca-Chr3 153330279 153330974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06801 10 193 C3H Transcription Factor Family AT3G60080 32.143 4.23e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06801 K11982 - gmx:100775530 266.159