Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06797 ATGTGGTCACTGTTAGGGTTACTCACGGTGCTCCAAAATGTGCTTCCATCACAGCTTCTCTCCGTGCTTCATTCTCTTTACGAATCTCTGCAAGATTTGCTCTCTCCCTATTCCTATTTTGAGATTCCAGAGTTCAACGGCTACTGCAGCGTGGAACTCAACGACCTTTACCGCCACGTCCACCTTTACCTCAACGCCGTGAACCACTCCCCTGCCGCCGCGTGCCGCCGCCTAACTCTGTCACGTTCCCCTTCCTCCAACCGCATTTCCTTCGCCGTGGCACCGAACCACACCGTTCACGACAACTTCCACGGCCACCGCCTATCCTGGACGCACCATGTGGACACGGTGCAGGACTCCGTCGAAGAAAAGCGCAGCTTCACCCTCCGGCTCCCGAAGCGCCACCGCCACGCGATCCTCTCCCCTTACCTTGCTCACGTGACCGCACGCGCTGAGGAGTTCGAACGTGTCTCGCGCGAGCGCAGGCTCTTCACCAACAACAACGGATCCGGGTCCTTTGAATCGGGTTGGGTCTCGGTTCCTTTCCGCCACCCTTCCACGTTCGAAACCCTAGCCTTAGAGCCCGAGCTGAAGAAGCAGATCAAGGACGACCTAACCGCTTTTGCAACGGGTAAGGAGTTCTACCACCGGGTCGGGCGGGCGTGGAAGCGCGGGTACTTGCTCCATGGTCCTCCCGGGTCGGGTAAATCCAGCCTCATTGCTGCCATGGCGAATTTCCTCTGCTACGACGTCTATGACTTGGAACTCACCAAGGTTACCGATAACTCCGAACTCCGCCGTTCGATCATCGTTATCGAGGACATTGATTGCTCCGTGGATTTAACTGCAGACAGAACGGCGAAGAAAATGGCCGCGAAGTTATCGTCAAAAGCAAGAAAGGATAAAACGACGTCGTCCCTGTCGTCTTCGGGTTGTGAGGAGAGCGGGCGGGTCACACTTTCAGGGCTCCTGAATTTCACGGACGGGTTATGGTCATGCTGTGGGGAAGAGAGGCTGGTGGTGTTTACGACGAATCACAGGGACAGTGTTGACCCGGCGCTGGTTCGGTGCGGGCGCATGGACGTGCACGTGAGTCTCGGCACGTGCGGGGTACACGCGTTTAAGGAGCTAGCGAGAAACTACCTTGGTGTGGAGTCGCACGTGATGTTCGAGGCTGTGGAAGGGTGCATTCGTTCGGGTGGGTCCCTAACGCCGGCGCACGTGGGTGAGATTCTGTTGAGGAACAGAGGGGATGCTGACGTGGCGATGAGGGAGGTGTTGTCCGCCATGCAGTCCAGGATGCTTGCCGTCGCTGCTGTCGCTGCCGACCAGACTGATAATGAGGAGACGGCGGTGGGGATGGGAGTGAGGTCCCCGGAGAGTGTGCTCCTGATGGGGTCGCCGGAGAATTGGGATTCCTTGAGTGGGAAGAAGAGGAAGGAGCAGCATGGGTCGAGTCATTGGGATAAGAAGGTCAAGTTTTTTGTGAGGTTAAGGTCGTTGACCAAATCTGACTCTGGTAGATGA 1527 0.5691 MWSLLGLLTVLQNVLPSQLLSVLHSLYESLQDLLSPYSYFEIPEFNGYCSVELNDLYRHVHLYLNAVNHSPAAACRRLTLSRSPSSNRISFAVAPNHTVHDNFHGHRLSWTHHVDTVQDSVEEKRSFTLRLPKRHRHAILSPYLAHVTARAEEFERVSRERRLFTNNNGSGSFESGWVSVPFRHPSTFETLALEPELKKQIKDDLTAFATGKEFYHRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVTDNSELRRSIIVIEDIDCSVDLTADRTAKKMAAKLSSKARKDKTTSSLSSSGCEESGRVTLSGLLNFTDGLWSCCGEERLVVFTTNHRDSVDPALVRCGRMDVHVSLGTCGVHAFKELARNYLGVESHVMFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVLSAMQSRMLAVAAVAADQTDNEETAVGMGVRSPESVLLMGSPENWDSLSGKKRKEQHGSSHWDKKVKFFVRLRSLTKSDSGR. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06797 508 ProSitePatterns AAA-protein family signature. 338 356 IPR003960 GO:0005524|GO:0016887
Seca3g06797 508 PANTHER BCS1 AAA-TYPE ATPASE 9 431 - -
Seca3g06797 508 MobiDBLite consensus disorder prediction 473 487 - -
Seca3g06797 508 Pfam ATPase family associated with various cellular activities (AAA) 227 366 IPR003959 GO:0005524|GO:0016887
Seca3g06797 508 Gene3D - 178 365 IPR027417 -
Seca3g06797 508 Gene3D - 366 437 - -
Seca3g06797 508 Pfam Domain associated at C-terminal with AAA 15 113 IPR025753 -
Seca3g06797 508 MobiDBLite consensus disorder prediction 468 487 - -
Seca3g06797 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 392 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06797 Seca-Chr3 153317695 153319245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06797 224 367 Calmodulin-binding Proteins AT3G56690 28.750 2.04e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06797 K08900 - gmx:100820437 866.685