Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06796 ATGTCGAAGCATATAACTCATGGCTTTCACTTGGTGAAGGGAAGATTGGATCACGAAATGGAAGACTATCATGTTGCTCAATTTAAGCAAATTGATAATAATGAACTGGGTTTATTTGCAATATTTGATGGCCACTCAAGTCACAATGTACCTGATTACTTGCTGTCTCATTTGTTTGATAATATCATAAAAGAGCCTGACTTCTGGATAGACCCAGCAGAAGCAATCAAGAGAGCATATAATGTAACTGATTCTACTATTTTAGAGAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAACAAGATTGATCAATTGTCAGAAGTTAGTAGTGGCCAATATTGGTGATTCTCGGGCTGTCTTATGCAAGAATGGAGTGGCCAAACATTTATCAGTGGATCATGAACTAAACACAGAAAGTGAGGATATAAAAAATAGAGGTGGTTTTGTGTCAAACTTCCCAGGTATAACATGTTTTAAAATGTTAGATAATGTTGCCTCCACCTTAACTTATTTCACACCTTTTTATATCTCAGCATCTCAACCATCCAAACAACTGATATCACCATATGACTAG 585 0.3675 MSKHITHGFHLVKGRLDHEMEDYHVAQFKQIDNNELGLFAIFDGHSSHNVPDYLLSHLFDNIIKEPDFWIDPAEAIKRAYNVTDSTILEKSGELGRGGSTAVTTRLINCQKLVVANIGDSRAVLCKNGVAKHLSVDHELNTESEDIKNRGGFVSNFPGITCFKMLDNVASTLTYFTPFYISASQPSKQLISPYD. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06796 194 Gene3D - 1 192 IPR036457 -
Seca3g06796 194 SMART PP2C_4 1 190 IPR001932 -
Seca3g06796 194 ProSiteProfiles PPM-type phosphatase domain profile. 6 194 IPR001932 -
Seca3g06796 194 CDD PP2Cc 7 155 IPR001932 -
Seca3g06796 194 Pfam Protein phosphatase 2C 16 155 IPR001932 -
Seca3g06796 194 PANTHER PROTEIN PHOSPHATASE 7 156 IPR015655 GO:0004722|GO:0006470
Seca3g06796 194 SUPERFAMILY PP2C-like 4 155 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06796 Seca-Chr3 153304349 153305316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06796 1 158 PP2C-type Phosphatase Gene Family AT3G15260 73.418 1.08e-86 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06796 K17506 - gmx:100787942 276.559