Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06795 ATGGAAACAACTAAAAACACCCTCCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAACTCTTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGCCCCCACAAAAAAGAAGGTGACTAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAAAGGATTTACAAAAAAAGATCTTTAGGGTTGTTAAGGAAGATCAAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAGCTACTAAAGAGGCTTGAGGAAGATCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTCAAGGAGAGGAACAATGAGAAAGATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTAAAGCGTTTACTTGGTTATGTGGAGCAAAAACTAAACAAAGTTAGAATGAGAACCAAGCATTTTAAGAAGGAGTTGCCTCCTAATCCTCCACCACTACCACCACCACCAGTGTCTTGTCCTCAAGAAAATGAGGTCCTACAGAAACAATCATCCTTAGATTTGGTGAAAGAGACAGATCAGGTGAATAGTGGTTTTCATGATAATAATGTGGGTAGCAGCAGCATGGGGCTACCACCACCACATGCAAATCTTAGAGATGTTGATATGGTGTTTCCCCAAGATAACTTTGGAGGTTTCAATAATGTGAGTGATTTAGGGGCATTTCCTCCAAGCAATTTTGGAGATCTCGTTGGTGAAAGTGACCTAGTGCCAGAGGTGTTCCCTCTTAGTGATTTTGGAGGCCTAATTGGTAAGACTAACTCAGGGTTAGGGGCATTTTCTCTAGAGAATTTTGGAAATCTCAATGGTGAAAGTGATCACTTAGGGTCAGAGGTGTTGCCTCCTCAAGGAAATTTTGAAGGTCTCAATGGTGAAAATGACTTTTGGTTGTTACCTCAAGGCAATTTTGAAGGTCTCAATGGTGAAAATGACTTGTGGTTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGAAATTATGAAGGTCTCAACGTTGGAAGTGACTCAAAGGCTTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGCCAATTATGGAGGTGTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGAATTTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGAAATTATGGAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTTTGAAGGTCTTAATATTGGAAGTGACTCATGGGTTTTACCTCAAGAAAATTTTGCAGGTCTCAATGGTGAATGTGATTTAGGAATATTGCTTGAAGATAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATGGTTCACAAGTGTGGCCTGAAGGTAATTTTGGGGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTAAAGGTCTCAATAGTGAAAGTGGTGATAGTTTACGGGTATTGCCTGAAGGAAGTTTTGGAGATCTCAATGATGGAAGTGATCTCTTCAAGATGAACATTGGAGGTAATTTTGATGGTCTCAATGGTGAAACTAATTCAGGGATTCTGAATGGAAGCTCTACTGATGAAATTGGAGGCAGTAACACATGGCCATCTTATGGACATTTTGAAAGTACAATTGGTGGAAGTTACATGGAAATAGGGCAGCATAATGAAAATCAAGGATGGTCCATTAACAACACATGGCTAATTTGTGGTCATCAAAACAACTCTGGAGCCAACACTAATGAAGCTTCTATGGGGAGATTCGATGCAAATTTTGTTGGAAATTACAATGAAAATAACTTAAATTCTGAATTGCCTACTCATGGAAATTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATTTTCCTTGA 2133 0.4027 METTKNTLPPPPPPPPPPPPPPPQTLPPPPQTKVNRAPTKKKVTKRKVSLKLIENLKVRKRIYKKRSLGLLRKIKELSILCGIPTCSVISGPGDTKPKIWPSPEVAKQLLKRLEEDPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKDMSILMHQIHHDGKSLSDFEPSDLKRLLGYVEQKLNKVRMRTKHFKKELPPNPPPLPPPPVSCPQENEVLQKQSSLDLVKETDQVNSGFHDNNVGSSSMGLPPPHANLRDVDMVFPQDNFGGFNNVSDLGAFPPSNFGDLVGESDLVPEVFPLSDFGGLIGKTNSGLGAFSLENFGNLNGESDHLGSEVLPPQGNFEGLNGENDFWLLPQGNFEGLNGENDLWLLPQGNFGGLNGESDEGNYEGLNVGSDSKALPQGNFGGLNGESDEANYGGVNVGSDSGVLPQGIFGGLNGESDEGNYGGLNVGSDSGVLPQGNFGGLNGESDEGNFEGLNIGSDSWVLPQENFAGLNGECDLGILLEDNFEGLNGERGDGSQVWPEGNFGDLNDGSDLLEMYNFKGLNSESGDSLRVLPEGSFGDLNDGSDLFKMNIGGNFDGLNGETNSGILNGSSTDEIGGSNTWPSYGHFESTIGGSYMEIGQHNENQGWSINNTWLICGHQNNSGANTNEASMGRFDANFVGNYNENNLNSELPTHGNFASSGEFGSDTQVPTSFGGNFP. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06795 710 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 53 93 IPR002100 GO:0003677|GO:0046983
Seca3g06795 710 SUPERFAMILY SRF-like 45 136 IPR036879 GO:0003677|GO:0046983
Seca3g06795 710 ProSiteProfiles MADS-box domain profile. 43 89 IPR002100 GO:0003677|GO:0046983
Seca3g06795 710 Gene3D - 57 139 IPR036879 GO:0003677|GO:0046983
Seca3g06795 710 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g06795 710 MobiDBLite consensus disorder prediction 1 44 - -
Seca3g06795 710 SMART madsneu2 43 102 IPR002100 GO:0003677|GO:0046983
Seca3g06795 710 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06795 Seca-Chr3 153112299 153114431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06795 43 214 Type I MADS-box Gene Family AT2G40210 33.140 8.87e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g06795 SRF-TF 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06795 - - gmx:106798339 217.238