Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g06794 ATGGAAACAACTAAAAACACCCTCCCCCCTCCTCCTCCTCCTCCTCCTCAAACTCTTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGCCCCAACAAAAAAGAAGGTGACTAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAAAGGATTTACAAAAAAAGATCTTTAGGGTTGTTAAGGAAGATGAAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAGCTACTAAAGAGGCTTGAGGAAGATCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTCAAGGAGAGGAACAATGAGAAAGATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGTCTAGTGATTTAAAGCGTTTACTTGGTTATGTGGAGCAAAAACTAAACAAAGTTAGAATGAAAACCAAACATTTTAAGAAGGAGTTGCCTCCTAATCCTCCACCACCACCACCCGTGTCTTGTCCTCAAGAAAATGAGGTCCTACAGAAACAATCATCCTTAGATTTGGTGAAAGAGACAGATCAGGTCAATAGTGGTTTTGATGATAATAATGTGGGTAGCAGCAGCATGGGGCTACCACCACCACATGCAAATCTTAGAGATGTTGATATGGTGTTTCCCCAAGATAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGGAGTGTTTCCTCCAAGCAATTTTGGAGATCTCGTTGGTGAAAGTGACCTAGGGTCAGAGGTGATCCCTCTTAGTGATTTTGAAGGCCTCATTGGTAAGATTGAGTCAAGGCTAGGGGCATTTCCTCTAGAGAATTTAGGAAATCTCAATGGTGAAAGTGATCACTTAGGGTCAGAGGTGTTGCCTCCTCAAGGCAATTTTGAAGTTCTCAATGGTGAAAATGACTCGTGGTTGTTACCTCAAGGCAATTTTGAAGGTCTCGATGGTGCAAAGGACTTGTGGTTGTTACCTGAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGAAGGTCTCAACGTTGGAAGTGACTCAGAGGTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGGAGGTCTCAATGTTGGAAGTGGCTCAGGGGTGTTACCTCAAGGAAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGAAATTATGGAGGTCTCAATGTTGGAAGTGACTCAGGGGTGTTACCTCAAGGAAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTTTGAAGGTCTTAATGTTGGAAGTGACTCATGGGTTTTACCTCAAGACAATTTTGGAAGTCTCAATGGTGAAAGTGATTTAGGAATATTGTTTGAAGACCATCTTGAAGGTCTCAATGGTGAAAGAGGTGATAGTTCACAAGTGTGTCCTGAAGGCAATTTTGAGGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTAAAGGTCTCAATAGTGAAAGTGGTGATAGTTCACGGGTATTGCCTGGAGGTAGTTTTGGAGATCTCAATGATGGAAGTGATCTCTTCAAGATGAACATTGGAGGTAATTTTGATGGTCTCAATGGTGAAACTAATTCAGGGATTCTGAATGGAAGCTCTACTGATGAAATTGGAGGCAGTAACACATGGCCATCTTATGGACATTTTGAAAGTACAATTGGTGGAAGTTACATGGAAATAGGGCAGCATAATGAAAATCAAGGATGGTCCATTAACAACACAGGGCTAATTTGTGGTCATCAAAACAACTCTGGAGCCAACACTAATGAAGCTGCTATGGGGAGATTCGATGCAAACTTTGTTGGAAATTACAATGGAAATAACTTGAATTCTAGATTGCCTACTCATGGAAATTTTGCTAGTAGCGATGAATTTGGAAGTGATACTCGAGTGCCTACATCATTTGGAGGAAATTTTCCTTGA 2106 0.4036 METTKNTLPPPPPPPPQTLPPPPQTKVNRAPTKKKVTKRKVSLKLIENLKVRKRIYKKRSLGLLRKMKELSILCGIPTCSVISGPGDTKPKIWPSPEVAKQLLKRLEEDPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKDMSILMHQIHHDGKSLSDFESSDLKRLLGYVEQKLNKVRMKTKHFKKELPPNPPPPPPVSCPQENEVLQKQSSLDLVKETDQVNSGFDDNNVGSSSMGLPPPHANLRDVDMVFPQDNFGGFNNVSDLGVFPPSNFGDLVGESDLGSEVIPLSDFEGLIGKIESRLGAFPLENLGNLNGESDHLGSEVLPPQGNFEVLNGENDSWLLPQGNFEGLDGAKDLWLLPEGNFGGLNGESDEGNYEGLNVGSDSEVLPQGNFGGLNGESDEGNYGGLNVGSGSGVLPQGNFGGLNGESDEGNYGGLNVGSDSGVLPQGNFGGLNGESDEGNFEGLNVGSDSWVLPQDNFGSLNGESDLGILFEDHLEGLNGERGDSSQVCPEGNFEDLNDGSDLLEMYNFKGLNSESGDSSRVLPGGSFGDLNDGSDLFKMNIGGNFDGLNGETNSGILNGSSTDEIGGSNTWPSYGHFESTIGGSYMEIGQHNENQGWSINNTGLICGHQNNSGANTNEAAMGRFDANFVGNYNGNNLNSRLPTHGNFASSDEFGSDTRVPTSFGGNFP. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g06794 701 CDD MADS_SRF_like 42 119 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca3g06794 701 MobiDBLite consensus disorder prediction 681 701 - -
Seca3g06794 701 MobiDBLite consensus disorder prediction 190 209 - -
Seca3g06794 701 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 86 IPR002100 GO:0003677|GO:0046983
Seca3g06794 701 MobiDBLite consensus disorder prediction 1 38 - -
Seca3g06794 701 ProSiteProfiles MADS-box domain profile. 36 82 IPR002100 GO:0003677|GO:0046983
Seca3g06794 701 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Seca3g06794 701 MobiDBLite consensus disorder prediction 1 27 - -
Seca3g06794 701 Coils Coil 122 149 - -
Seca3g06794 701 Gene3D - 50 135 IPR036879 GO:0003677|GO:0046983
Seca3g06794 701 MobiDBLite consensus disorder prediction 379 451 - -
Seca3g06794 701 SUPERFAMILY SRF-like 38 129 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g06794 Seca-Chr3 152999035 153001140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g06794 36 202 Type I MADS-box Gene Family AT2G40210 33.533 1.90e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g06794 SRF-TF 8.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g06794 - - gmx:106798339 216.468